2K9F

Structural features of the complex between the DsbD N-terminal and the PilB N-terminal domains from Neisseria meningitidis


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 300 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Formation of the complex between DsbD and PilB N-terminal domains from Neisseria meningitidis necessitates an adaptability of nDsbD.

Quinternet, M.Tsan, P.Selme-Roussel, L.Jacob, C.Boschi-Muller, S.Branlant, G.Cung, M.T.

(2009) Structure 17: 1024-1033

  • DOI: https://doi.org/10.1016/j.str.2009.05.011
  • Primary Citation of Related Structures:  
    2K9F

  • PubMed Abstract: 

    DsbD transmembrane protein dispatches electrons to periplasmic Trx/DsbE-like partners via specific interactions with its N-terminal domain, nDsbD. In the present study, PilB N-terminal domain (NterPilB) is shown to efficiently accept electrons coming from nDsbD from Neisseria meningitidis. Using an NMR-driven docking approach, we have modeled the structure of a mixed disulfide complex between NterPilB and nDsbD. We show the needed opening of nDsbD cap-loop whereas NterPilB FLHE loop does not seem essential in the formation and stabilization of the complex. Relaxation analysis performed on backbone amide groups highlights a kind of dynamics transfer from nDsbD cap-loop on NterPilB alpha1 helix, suggesting that a mobility contribution is required not only for the formation of the mixed disulfide complex, but also for its disruption. Taking into account previous X-ray data on covalent complexes involving nDsbD, a cartoon of interactions between Trx-like partners and nDsbD is proposed that illustrates the adaptability of nDsbD.


  • Organizational Affiliation

    Laboratoire de Chimie Physique Macromoléculaire UMR 7568 CNRS-INPL, Nancy Université, 1 rue Grandville, B.P. 20451, 54001 Nancy Cedex, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Thioredoxin144Neisseria meningitidis serogroup AMutation(s): 0 
Gene Names: msrABpilB
UniProt
Find proteins for Q9JWM8 (Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491))
Explore Q9JWM8 
Go to UniProtKB:  Q9JWM8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9JWM8
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Thiol:disulfide interchange protein dsbD128Neisseria meningitidis serogroup BMutation(s): 1 
Gene Names: dsbD
EC: 1.8.1.8
UniProt
Find proteins for Q9JYM0 (Neisseria meningitidis serogroup B (strain MC58))
Explore Q9JYM0 
Go to UniProtKB:  Q9JYM0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9JYM0
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 300 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-05-19
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2022-03-16
    Changes: Data collection, Database references, Derived calculations