2JZL | pdb_00002jzl

Structure of NcCVNH (N. CRASSA CVNH)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 800 
  • Conformers Submitted: 30 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 2JZL

This is version 1.3 of the entry. See complete history

Literature

The evolutionarily conserved family of cyanovirin-N homologs: structures and carbohydrate specificity.

Koharudin, L.M.Viscomi, A.R.Jee, J.G.Ottonello, S.Gronenborn, A.M.

(2008) Structure 16: 570-584

  • DOI: https://doi.org/10.1016/j.str.2008.01.015
  • Primary Citation Related Structures: 
    2JZJ, 2JZK, 2JZL, 2KJL

  • PubMed Abstract: 

    Solution structures for three members of the recently discovered cyanovirin-N (CV-N) homolog family of lectins have been determined. Cyanovirin-N homologs (CVNHs) from Tuber borchii, Ceratopteris richardii, and Neurospora crassa, representing each of the three phylogenetic groups, were selected. All proteins exhibit the same fold, and the overall structures resemble that of the founding member of the family, CV-N, albeit with noteworthy differences in loop conformation and detailed local structure. Since no data are available regarding the proteins' function or their natural ligands, extensive carbohydrate-binding studies were conducted. We delineated ligand-binding sites on all three proteins by nuclear magnetic resonance and identified which sugars interact by array screening. The number and location of binding sites vary for the three proteins, and different ligand specificities exist. Potential physiological roles for two family members, TbCVNH and NcCVNH, were probed in nutrition deprivation experiments that suggest a possible involvement of these proteins in lifestyle-related responses.


  • Organizational Affiliation
    • Department of Structural Biology, School of Medicine, University of Pittsburgh, Biomedical Science Tower 3, 3501 Fifth Avenue, Pittsburgh, PA 15260, USA.

Macromolecule Content 

  • Total Structure Weight: 13.22 kDa 
  • Atom Count: 913 
  • Modeled Residue Count: 111 
  • Deposited Residue Count: 114 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Cyanovirin-N homolog114Neurospora crassaMutation(s): 0 
UniProt
Find proteins for Q7S6U4 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
Explore Q7S6U4 
Go to UniProtKB:  Q7S6U4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7S6U4
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 800 
  • Conformers Submitted: 30 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-03-25
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2022-03-16
    Changes: Data collection, Database references, Derived calculations, Structure summary
  • Version 1.3: 2024-05-29
    Changes: Data collection