2JKT

AP2 CLATHRIN ADAPTOR CORE with CD4 Dileucine peptide RM(phosphoS) EIKRLLSE Q to E mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.40 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.205 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A Structural Explanation for the Binding of Endocytic Dileucine Motifs by the Ap2 Complex.

Kelly, B.T.Mccoy, A.J.Spaete, K.Miller, S.E.Evans, P.R.Hoening, S.Owen, D.J.

(2008) Nature 456: 976


Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
AP-2 COMPLEX SUBUNIT ALPHA-2A, E [auth L]623Mus musculusMutation(s): 0 
Gene Names: Ap2a2Adtab
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Find proteins for P17427 (Mus musculus)
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Go to UniProtKB:  P17427
IMPC:  MGI:101920
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
AP-2 COMPLEX SUBUNIT BETA-1B, C [auth E]591Homo sapiensMutation(s): 0 
Gene Names: AP2B1ADTB2CLAPB1
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Find proteins for P63010 (Homo sapiens)
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PHAROS:  P63010
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
AP-2 COMPLEX SUBUNIT SIGMA-1D [auth I], I [auth S]142Mus musculusMutation(s): 0 
Gene Names: Ap2s1Ap17Claps2
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Find proteins for P62743 (Mus musculus)
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IMPC:  MGI:2141861
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
AP-2 COMPLEX SUBUNIT MU-1F [auth M], J [auth U]435Rattus norvegicusMutation(s): 0 
Gene Names: Ap2m1
UniProt
Find proteins for P84092 (Rattus norvegicus)
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
CD4 PEPTIDEG [auth P], H [auth Q]11Homo sapiensMutation(s): 1 
Gene Names: CD4
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Find proteins for P01730 (Homo sapiens)
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PHAROS:  P01730
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
AA [auth L] , BA [auth L] , CA [auth L] , DA [auth L] , EA [auth L] , FA [auth L] , GA [auth L] , HA [auth L] , 
AA [auth L],  BA [auth L],  CA [auth L],  DA [auth L],  EA [auth L],  FA [auth L],  GA [auth L],  HA [auth L],  IA [auth M],  JA [auth M],  K [auth A],  KA [auth M],  L [auth A],  LA [auth U],  M [auth A],  MA [auth U],  N [auth A],  NA [auth U],  O [auth A],  OA [auth U],  P [auth A],  Q [auth A],  R [auth B],  S [auth B],  T [auth B],  U [auth B],  V [auth B],  W [auth E],  X [auth E],  Y [auth E],  Z [auth E]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
SEP
Query on SEP
G [auth P], H [auth Q]L-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.40 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.205 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 171.2α = 90
b = 171.2β = 90
c = 324.27γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-10-28
    Type: Initial release
  • Version 1.1: 2012-06-20
    Changes: Database references, Derived calculations, Non-polymer description, Other, Refinement description, Version format compliance