2JKR

AP2 CLATHRIN ADAPTOR CORE with Dileucine peptide RM(phosphoS)QIKRLLSE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.199 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

A Structural Explanation for the Binding of Endocytic Dileucine Motifs by the Ap2 Complex.

Kelly, B.T.Mccoy, A.J.Spaete, K.Miller, S.E.Evans, P.R.Hoening, S.Owen, D.J.

(2008) Nature 456: 976


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
AP-2 COMPLEX SUBUNIT ALPHA-2
A, L
623Mus musculusMutation(s): 0 
Gene Names: Ap2a2 (Adtab)
Find proteins for P17427 (Mus musculus)
Go to UniProtKB:  P17427
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
AP-2 COMPLEX SUBUNIT BETA-1
B, E
591Homo sapiensMutation(s): 0 
Gene Names: AP2B1 (ADTB2, CLAPB1)
Find proteins for P63010 (Homo sapiens)
Go to Gene View: AP2B1
Go to UniProtKB:  P63010
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
AP-2 COMPLEX SUBUNIT SIGMA-1
I, S
142Mus musculusMutation(s): 0 
Gene Names: Ap2s1 (Ap17, Claps2)
Find proteins for P62743 (Mus musculus)
Go to UniProtKB:  P62743
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
AP-2 COMPLEX SUBUNIT MU-1
M, U
435Rattus norvegicusMutation(s): 0 
Gene Names: Ap2m1
Find proteins for P84092 (Rattus norvegicus)
Go to UniProtKB:  P84092
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
CD4 PEPTIDE
P, Q
11Homo sapiensMutation(s): 0 
Gene Names: CD4
Find proteins for P01730 (Homo sapiens)
Go to Gene View: CD4
Go to UniProtKB:  P01730
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, E, L, M, U
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
SEP
Query on SEP
P, Q
L-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.199 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 169.900α = 90.00
b = 169.900β = 90.00
c = 321.700γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
SCALAdata scaling
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-10-28
    Type: Initial release
  • Version 1.1: 2012-06-20
    Type: Database references, Derived calculations, Non-polymer description, Other, Refinement description, Version format compliance