2JKR

AP2 CLATHRIN ADAPTOR CORE with Dileucine peptide RM(phosphoS)QIKRLLSE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.202 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A Structural Explanation for the Binding of Endocytic Dileucine Motifs by the Ap2 Complex.

Kelly, B.T.Mccoy, A.J.Spaete, K.Miller, S.E.Evans, P.R.Hoening, S.Owen, D.J.

(2008) Nature 456: 976


Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
AP-2 COMPLEX SUBUNIT ALPHA-2A,
E [auth L]
623Mus musculusMutation(s): 0 
Gene Names: Ap2a2Adtab
UniProt & NIH Common Fund Data Resources
Find proteins for P17427 (Mus musculus)
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IMPC:  MGI:101920
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UniProt GroupP17427
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
AP-2 COMPLEX SUBUNIT BETA-1B,
C [auth E]
591Homo sapiensMutation(s): 0 
Gene Names: AP2B1ADTB2CLAPB1
UniProt & NIH Common Fund Data Resources
Find proteins for P63010 (Homo sapiens)
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PHAROS:  P63010
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UniProt GroupP63010
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
AP-2 COMPLEX SUBUNIT SIGMA-1D [auth I],
I [auth S]
142Mus musculusMutation(s): 0 
Gene Names: Ap2s1Ap17Claps2
UniProt & NIH Common Fund Data Resources
Find proteins for P62743 (Mus musculus)
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IMPC:  MGI:2141861
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
AP-2 COMPLEX SUBUNIT MU-1F [auth M],
J [auth U]
435Rattus norvegicusMutation(s): 0 
Gene Names: Ap2m1
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
CD4 PEPTIDEG [auth P],
H [auth Q]
11Homo sapiensMutation(s): 0 
Gene Names: CD4
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PHAROS:  P01730
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UniProt GroupP01730
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Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
AA [auth L],
BA [auth L],
CA [auth L],
DA [auth L],
EA [auth L],
AA [auth L],
BA [auth L],
CA [auth L],
DA [auth L],
EA [auth L],
FA [auth L],
GA [auth L],
HA [auth L],
IA [auth M],
JA [auth M],
K [auth A],
KA [auth M],
L [auth A],
LA [auth U],
M [auth A],
MA [auth U],
N [auth A],
NA [auth U],
O [auth A],
OA [auth U],
P [auth A],
Q [auth A],
R [auth B],
S [auth B],
T [auth B],
U [auth B],
V [auth E],
W [auth E],
X [auth E],
Y [auth E],
Z [auth E]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
SEP
Query on SEP
G [auth P],
H [auth Q]
L-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.202 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 169.9α = 90
b = 169.9β = 90
c = 321.7γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-10-28
    Type: Initial release
  • Version 1.1: 2012-06-20
    Changes: Database references, Derived calculations, Non-polymer description, Other, Refinement description, Version format compliance