2JKR

AP2 CLATHRIN ADAPTOR CORE with Dileucine peptide RM(phosphoS)QIKRLLSE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A Structural Explanation for the Binding of Endocytic Dileucine Motifs by the Ap2 Complex.

Kelly, B.T.Mccoy, A.J.Spaete, K.Miller, S.E.Evans, P.R.Hoening, S.Owen, D.J.

(2008) Nature 456: 976


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
AP-2 COMPLEX SUBUNIT MU-1
M, U
435Rattus norvegicusMutation(s): 0 
Gene Names: Ap2m1
Find proteins for P84092 (Rattus norvegicus)
Go to UniProtKB:  P84092

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
AP-2 COMPLEX SUBUNIT ALPHA-2
A, L
623Mus musculusMutation(s): 0 
Gene Names: Ap2a2Adtab
Find proteins for P17427 (Mus musculus)
Go to UniProtKB:  P17427
NIH Common Fund Data Resources
IMPC  MGI:101920

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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
AP-2 COMPLEX SUBUNIT BETA-1
B, E
591Homo sapiensMutation(s): 0 
Gene Names: AP2B1ADTB2CLAPB1
Find proteins for P63010 (Homo sapiens)
Go to UniProtKB:  P63010
NIH Common Fund Data Resources
PHAROS  P63010

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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
AP-2 COMPLEX SUBUNIT SIGMA-1
I, S
142Mus musculusMutation(s): 0 
Gene Names: Ap2s1Ap17Claps2
Find proteins for P62743 (Mus musculus)
Go to UniProtKB:  P62743
NIH Common Fund Data Resources
  • Find similar proteins by: Sequence   |   Structure
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
CD4 PEPTIDE
P, Q
11Homo sapiensMutation(s): 0 
Find proteins for B0AZV7 (Homo sapiens)
Go to UniProtKB:  B0AZV7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download CCD File 
A, B, E, L, M, U
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
SEP
Query on SEP
P,Q
L-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.202 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 169.9α = 90
b = 169.9β = 90
c = 321.7γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-10-28
    Type: Initial release
  • Version 1.1: 2012-06-20
    Changes: Database references, Derived calculations, Non-polymer description, Other, Refinement description, Version format compliance