2JKR

AP2 CLATHRIN ADAPTOR CORE with Dileucine peptide RM(phosphoS)QIKRLLSE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.202 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A Structural Explanation for the Binding of Endocytic Dileucine Motifs by the Ap2 Complex.

Kelly, B.T.Mccoy, A.J.Spaete, K.Miller, S.E.Evans, P.R.Hoening, S.Owen, D.J.

(2008) Nature 456: 976


Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
AP-2 COMPLEX SUBUNIT ALPHA-2 AL623Mus musculusMutation(s): 0 
Gene Names: Ap2a2Adtab
Find proteins for P17427 (Mus musculus)
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Go to UniProtKB:  P17427
NIH Common Fund Data Resources
IMPC:  MGI:101920
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
AP-2 COMPLEX SUBUNIT BETA-1 BE591Homo sapiensMutation(s): 0 
Gene Names: AP2B1ADTB2CLAPB1
Find proteins for P63010 (Homo sapiens)
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Go to UniProtKB:  P63010
NIH Common Fund Data Resources
PHAROS:  P63010
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
AP-2 COMPLEX SUBUNIT SIGMA-1 IS142Mus musculusMutation(s): 0 
Gene Names: Ap2s1Ap17Claps2
Find proteins for P62743 (Mus musculus)
Explore P62743 
Go to UniProtKB:  P62743
NIH Common Fund Data Resources
IMPC:  MGI:2141861
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
AP-2 COMPLEX SUBUNIT MU-1 MU435Rattus norvegicusMutation(s): 0 
Gene Names: Ap2m1
Find proteins for P84092 (Rattus norvegicus)
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Go to UniProtKB:  P84092
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
CD4 PEPTIDE PQ11Homo sapiensMutation(s): 0 
Gene Names: CD4
Find proteins for P01730 (Homo sapiens)
Explore P01730 
Go to UniProtKB:  P01730
NIH Common Fund Data Resources
PHAROS:  P01730
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
A, B, E, L, M, U
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
SEP
Query on SEP
P,QL-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.202 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 169.9α = 90
b = 169.9β = 90
c = 321.7γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-10-28
    Type: Initial release
  • Version 1.1: 2012-06-20
    Changes: Database references, Derived calculations, Non-polymer description, Other, Refinement description, Version format compliance