2IL8

THREE-DIMENSIONAL STRUCTURE OF INTERLEUKIN 8 IN SOLUTION


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Submitted: 30 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Three-dimensional structure of interleukin 8 in solution.

Clore, G.M.Appella, E.Yamada, M.Matsushima, K.Gronenborn, A.M.

(1990) Biochemistry 29: 1689-1696

  • DOI: 10.1021/bi00459a004
  • Primary Citation of Related Structures:  
    1IL8, 2IL8

  • PubMed Abstract: 
  • The solution structure of the interleukin 8 (IL-8) dimer has been solved by nuclear magnetic resonance (NMR) spectroscopy and hybrid distance geometry-dynamical simulated annealing calculations. The structure determination is based on a total of 1880 experimental distance restraints (of which 82 are intersubunit) and 362 torsion angle restraints (comprising phi, psi, and chi 1 torsion angles) ...

    The solution structure of the interleukin 8 (IL-8) dimer has been solved by nuclear magnetic resonance (NMR) spectroscopy and hybrid distance geometry-dynamical simulated annealing calculations. The structure determination is based on a total of 1880 experimental distance restraints (of which 82 are intersubunit) and 362 torsion angle restraints (comprising phi, psi, and chi 1 torsion angles). A total of 30 simulated annealing structures were calculated, and the atomic rms distribution about the mean coordinate positions (excluding residues 1-5 of each subunit) is 0.41 +/- 0.08 A for the backbone atoms and 0.90 +/- 0.08 A for all atoms. The three-dimensional solution structure of the IL-8 dimer reveals a structural motif in which two symmetry-related antiparallel alpha-helices, approximately 24 A long and separated by about 14 A, lie on top of a six-stranded antiparallel beta-sheet platform derived from two three-stranded Greek keys, one from each monomer unit. The general architecture is similar to that of the alpha 1/alpha 2 domains of the human class I histocompatibility antigen HLA-A2. It is suggested that the two alpha-helices form the binding site for the cellular receptor and that the specificity of IL-8, as well as that of a number of related proteins involved in cell-specific chemotaxis, mediation of cell growth, and the inflammatory response, is achieved by the distinct distribution of charged and polar residues at the surface of the helices.


    Related Citations: 
    • Determination of the Secondary Structure of Interleukin-8 by Nuclear Magnetic Resonance Spectroscopy
      Clore, G.M., Appella, E., Yamada, M., Matsushima, K., Gronenborn, A.M.
      (1989) J Biol Chem 264: 18907

    Organizational Affiliation

    Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
INTERLEUKIN-8A, B72Homo sapiensMutation(s): 0 
Gene Names: POTENTIALCXCL8IL8
Find proteins for P10145 (Homo sapiens)
Explore P10145 
Go to UniProtKB:  P10145
NIH Common Fund Data Resources
PHAROS:  P10145
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Submitted: 30 
  • OLDERADO: 2IL8 Olderado

Structure Validation

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Entry History 

Deposition Data

  • Deposited Date: 1990-03-08 
  • Released Date: 1991-01-15 
  • Deposition Author(s): Clore, G.M.

Revision History  (Full details and data files)

  • Version 1.0: 1991-01-15
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance