Crystal Structure of the SAM Dependent Methyltransferase from Agrobacterium tumefaciens
Kim, Y., Joachimiak, A., Xu, X., Gu, J., Edwards, A., Savchenko, A.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
SAM dependent methyltransferase | 332 | Agrobacterium fabrum str. C58 | Mutation(s): 7  | ||
UniProt | |||||
Find proteins for A9CKD6 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore A9CKD6  Go to UniProtKB:  A9CKD6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A9CKD6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SAM Query on SAM | D [auth A], J [auth B], N [auth C] | S-ADENOSYLMETHIONINE C15 H22 N6 O5 S MEFKEPWMEQBLKI-FCKMPRQPSA-N | |||
GOL Query on GOL | E [auth A], O [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ACY Query on ACY | F [auth A] G [auth A] H [auth A] P [auth C] Q [auth C] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N | |||
FMT Query on FMT | I [auth A] K [auth B] L [auth B] M [auth B] S [auth C] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 83.941 | α = 90 |
b = 145.555 | β = 90 |
c = 204.895 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
SBC-Collect | data collection |
HKL-2000 | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
HKL-3000 | phasing |
SHELXCD | phasing |
SHELXD | phasing |
SHELXE | model building |
SOLVE | phasing |
RESOLVE | phasing |
MLPHARE | phasing |
Coot | model building |
ARP/wARP | model building |