Download MendeleyCrystal structure of Uncharacterized conserved protein of COG5135 (ZP_00109616.1) from Nostoc punctiforme PCC 73102 at 1.40 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2I51
CRYSTAL STRUCTURE OF a pyridoxamine 5'-phosphate oxidase-related, FMN binding protein (NPUN_F5749) FROM NOSTOC PUNCTIFORME PCC 73102 AT 1.40 A RESOLUTION
- PDB DOI: 10.2210/pdb2I51/pdb
- Classification: FLAVOPROTEIN
- Organism(s): Nostoc punctiforme PCC 73102
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-08-23 Released: 2006-09-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.188
- R-Value Work: 0.165
- R-Value Observed: 0.166
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized conserved protein of COG5135 | A, B | 195 | Nostoc punctiforme PCC 73102 | Mutation(s): 0 Gene Names: ZP_00109616.1, Npun_F5749 |  |
UniProt | |||||
Find proteins for B2J933 (Nostoc punctiforme (strain ATCC 29133 / PCC 73102)) Explore B2J933 Go to UniProtKB: B2J933 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B2J933 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FMN Query on FMN | C [auth A], P [auth B] | FLAVIN MONONUCLEOTIDE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N |  | Ligand Interaction | |
| GOL Query on GOL | Y [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.188
- R-Value Work: 0.165
- R-Value Observed: 0.166
- Space Group: P 21 21 21
- Diffraction Data DOI: 10.18430/M32I51
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.647 | α = 90 |
| b = 65.928 | β = 90 |
| c = 112.38 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| SHELX | phasing |
| REFMAC | refinement |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| autoSHARP | phasing |
Entry History
Deposition Data
- Released Date: 2006-09-05 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-09-05
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2017-10-25
Changes: Author supporting evidence
