2GRL | pdb_00002grl

Crystal structure of dCT/iCF10 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 
    0.271 (Depositor), 0.268 (DCC) 
  • R-Value Work: 
    0.238 (Depositor), 0.238 (DCC) 
  • R-Value Observed: 
    0.238 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 2GRL

This is version 1.3 of the entry. See complete history

Literature

Molecular basis for control of conjugation by bacterial pheromone and inhibitor peptides.

Kozlowicz, B.K.Shi, K.Gu, Z.Y.Ohlendorf, D.H.Earhart, C.A.Dunny, G.M.

(2006) Mol Microbiol 62: 958-969

  • DOI: https://doi.org/10.1111/j.1365-2958.2006.05434.x
  • Primary Citation Related Structures: 
    2GRL, 2GRM

  • PubMed Abstract: 

    In many bacteria expression of lateral gene transfer and of virulence factors is controlled by cell-cell signalling systems. Molecular interactions of microbial signal molecules with their cognate receptors are not well understood. For the Enterococcus faecalis conjugative plasmid pCF10, the PrgX protein serves as a molecular switch controlling expression of conjugation and virulence genes encoded by the plasmid. The induction state of a pCF10-carrying donor cell is determined by the ratio of two signalling peptides, cCF10 pheromone and iCF10 inhibitor. Recent analysis of PrgX/cCF10 interactions suggests a mechanism for conversion to the induced state. However, the means by which iCF10 peptide antagonizes cCF10 activity is unclear, and it has been suggested that inhibitor peptides block import of pheromone peptides. We now show that both of these peptides interact with the same binding pocket of PrgX, but they differentially alter the conformation of the protein and its oligomerization state, resulting in opposing biological activities.


  • Organizational Affiliation
    • Department of Microbiology, 1460 Mayo Memorial Building, University of Minnesota, Minneapolis, MN 55455, USA.

Macromolecule Content 

  • Total Structure Weight: 149.34 kDa 
  • Atom Count: 9,556 
  • Modeled Residue Count: 1,153 
  • Deposited Residue Count: 1,275 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
PrgX
A, B, C, D
317Enterococcus faecalisMutation(s): 0 
UniProt
Find proteins for Q04114 (Enterococcus faecalis)
Explore Q04114 
Go to UniProtKB:  Q04114
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ04114
Sequence Annotations
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Reference Sequence
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
peptide7N/AMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free:  0.271 (Depositor), 0.268 (DCC) 
  • R-Value Work:  0.238 (Depositor), 0.238 (DCC) 
  • R-Value Observed: 0.238 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.75α = 90
b = 110.124β = 90
c = 188.599γ = 90
Software Package:
Software NamePurpose
CrystalCleardata collection
d*TREKdata reduction
EPMRphasing
CNSrefinement
CrystalCleardata reduction
d*TREKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-04-03
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-02-14
    Changes: Data collection, Database references