Structure of hypothetical protein ph0006 from Pyrococcus horikoshii
Cuff, M.E., Skarina, T., Gorodichtchenskaia, E., Edwards, A., Savchenko, A., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
UPF0204 protein PH0006 | A, B, C | 298 | Pyrococcus horikoshii OT3 | Mutation(s): 9  Gene Names: PH0006, dtdA EC: 3.1.1.96 | ![]() |
UniProt | |||||
Find proteins for O57774 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O57774  Go to UniProtKB:  O57774 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O57774 | ||||
Protein Feature ViewExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | Ligand Interaction | ||
MG Query on MG | J [auth A], R [auth B], W [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | Ligand Interaction |
Modified Residues  1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 65.021 | α = 90 |
b = 67.029 | β = 90.09 |
c = 111.572 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
SBC-Collect | data collection |
HKL-2000 | data scaling |
HKL-3000 | phasing |
SHELX | phasing |
MLPHARE | phasing |
DM | phasing |
SOLVE | phasing |
RESOLVE | phasing |
Coot | model building |
O | model building |
ARP/wARP | model building |