Download MendeleyStructure of hypothetical protein ph0006 from Pyrococcus horikoshii
Cuff, M.E., Skarina, T., Gorodichtchenskaia, E., Edwards, A., Savchenko, A., Joachimiak, A.To be published.
2GFQ
Structure of Protein of Unknown Function PH0006 from Pyrococcus horikoshii
- DOI: 10.2210/pdb2GFQ/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Pyrococcus horikoshii OT3
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2006-03-22 Released: 2006-04-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.179
- R-Value Work: 0.150
- R-Value Observed: 0.152
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UPF0204 protein PH0006 | A, B, C | 298 | Pyrococcus horikoshii OT3 | Mutation(s): 9 Gene Names: PH0006, dtdA EC: 3.1.1.96 |  |
UniProt | |||||
Find proteins for O57774 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O57774 Go to UniProtKB: O57774 | |||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | D [auth A]
, E [auth A]
, F [auth A]
, G [auth A]
, H [auth A]
, I [auth A]
, K [auth B]
, L [auth B]
, | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| MG Query on MG | J [auth A], R [auth B], W [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.179
- R-Value Work: 0.150
- R-Value Observed: 0.152
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.021 | α = 90 |
| b = 67.029 | β = 90.09 |
| c = 111.572 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data scaling |
| HKL-3000 | phasing |
| SHELX | phasing |
| MLPHARE | phasing |
| DM | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| Coot | model building |
| O | model building |
| ARP/wARP | model building |
Entry History
Deposition Data
- Deposited Date: 2006-03-22
- Released Date: 2006-04-25 Deposition Author(s): Cuff, M.E., Skarina, T., Gorodichtchenskaia, E., Edwards, A., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-04-25
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance
