2F8N

2.9 Angstrom X-ray structure of hybrid macroH2A nucleosomes


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.217 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Nucleosomes containing the histone domain of macroH2A: In vitro possibilities.

Chakravarthy, S.Luger, K.

To be published.

Macromolecules

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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Histone H3.1A, E136Xenopus laevisMutation(s): 0 
Find proteins for P84233 (Xenopus laevis)
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  • Reference Sequence

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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Histone H4B, F103Xenopus laevisMutation(s): 0 
Find proteins for P62799 (Xenopus laevis)
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  • Reference Sequence

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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Histone 3, H2baD126Mus musculusMutation(s): 0 
Gene Names: Hist3h2ba
Find proteins for Q9D2U9 (Mus musculus)
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  • Reference Sequence

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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Histone H2B.1H123Xenopus laevisMutation(s): 0 
Find proteins for P02281 (Xenopus laevis)
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  • Reference Sequence

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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
Core histone macro-H2A.1G120Homo sapiensMutation(s): 0 
Gene Names: MACROH2A1H2AFY
Find proteins for O75367 (Homo sapiens)
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NIH Common Fund Data Resources
PHAROS  O75367
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  • Reference Sequence

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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
Histone H2A type 1K149Mus musculusMutation(s): 0 
Gene Names: H2ac12Hist1h2ah
Find proteins for Q8CGP6 (Mus musculus)
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  • Reference Sequence

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Entity ID: 1
MoleculeChainsLengthOrganism
alpha-satellite DNA (146 bp)I, J146Homo sapiens
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.217 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 106.145α = 90
b = 109.272β = 90
c = 176.273γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
CNSrefinement
CNSphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-05-23
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance