2EVS
Crystal structure of human Glycolipid Transfer Protein complexed with n-hexyl-beta-D-glucoside
- PDB DOI: https://doi.org/10.2210/pdb2EVS/pdb
- Classification: LIPID TRANSPORT
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2005-10-31 Released: 2006-11-14 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.236 
- R-Value Work: 0.190 
- R-Value Observed: 0.192 
This is version 1.5 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Glycolipid transfer protein | A, B [auth E] | 209 | Homo sapiens | Mutation(s): 0  Gene Names: GLTP | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NZD2 (Homo sapiens) Explore Q9NZD2  Go to UniProtKB:  Q9NZD2 | |||||
PHAROS:  Q9NZD2 GTEx:  ENSG00000139433  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9NZD2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GLC Query on GLC | C [auth A], G [auth E] | alpha-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-DVKNGEFBSA-N | |||
D10 Query on D10 | E [auth A] | DECANE C10 H22 DIOQZVSQGTUSAI-UHFFFAOYSA-N | |||
HEX Query on HEX | D [auth A], F [auth A], H [auth E] | HEXANE C6 H14 VLKZOEOYAKHREP-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.236 
- R-Value Work: 0.190 
- R-Value Observed: 0.192 
- Space Group: C 1 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 157.913 | α = 90 |
b = 42.18 | β = 104.57 |
c = 70.819 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
CrystalClear | data reduction |
AMoRE | phasing |
Entry History 
Deposition Data
- Released Date: 2006-11-14  Deposition Author(s): Malinina, L., Malakhova, M.L., Kanack, A.T., Abagyan, R., Brown, R.E., Patel, D.J.
Revision History (Full details and data files)
- Version 1.0: 2006-11-14
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.5: 2023-08-23
Changes: Data collection, Database references, Refinement description, Structure summary