2E2U | pdb_00002e2u

Substrate Schiff-base analogue of copper amine oxidase from Arthrobacter globiformis formed with 4-hydroxybenzylhydrazine

• PDB DOI: https://doi.org/10.2210/pdb2E2U/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Arthrobacter globiformis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2006-11-17 Released: 2007-11-20 
• Deposition Author(s): Murakawa, T., Okajima, T., Taki, M., Yamamoto, Y., Hayashi, H., Tanizawa, K.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.68 Å
• R-Value Free: 
  0.236 (Depositor), 0.232 (DCC) 
• R-Value Work: 
  0.209 (Depositor), 0.206 (DCC) 

Literature

Catalytic Regulation Conducted by the Substrate Schiff Base and Conserved Aspartic Acid Residue in Bacterial Copper Amine Oxidase Reaction

Murakawa, T., Okajima, T., Taki, M., Yamamoto, Y., Kuroda, S., Hayashi, H., Tanizawa, K.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 139.91 kDa 
• Atom Count: 10,974 
• Modeled Residue Count: 1,240 
• Deposited Residue Count: 1,256 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phenylethylamine oxidase	A, B	628	Arthrobacter globiformis	Mutation(s): 0  EC: 1.4.3.6 (PDB Primary Data), 1.4.3.21 (UniProt)
UniProt
Find proteins for P46881 (Arthrobacter globiformis) Explore P46881  Go to UniProtKB:  P46881

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CU	C [auth A], D [auth B]	COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
4HL	A, B	L-PEPTIDE LINKING	C16 H17 N3 O5		TYR

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.68 Å
• R-Value Free:  0.236 (Depositor), 0.232 (DCC) 
• R-Value Work:  0.209 (Depositor), 0.206 (DCC) 

Space Group: I 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 157.967	α = 90
b = 63.07	β = 112.04
c = 184.052	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
MOSFLM	data reduction
SCALA	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-11-20 
Deposition Author(s): Murakawa, T., Okajima, T., Taki, M., Yamamoto, Y., Hayashi, H., Tanizawa, K.

Revision History  

• Version 1.0: 2007-11-20
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.2: 2013-04-24
  Changes: Structure summary
• Version 1.3: 2025-03-26
  Changes: Data collection, Database references, Derived calculations, Structure summary