Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 90945.72 
• Atom Count: 6395 
• Residue Count: 846 
• Unique protein chains: 1

2DSJ

Crystal structure of project ID TT0128 from Thermus thermophilus HB8

• DOI: 10.2210/pdb2DSJ/pdb

• Classification: TRANSFERASE
• Organism(s): Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
• Expression System: Escherichia coli BL21(DE3)


• Deposited: 2006-06-30 Released: 2006-12-30 
• Deposition Author(s): Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.8 Å
• R-Value Free: 0.222 
• R-Value Work: 0.198 

Literature

Crystal structure of project ID TT0128 from Thermus thermophilus HB8

Shimizu, K., Kunishima, N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Pyrimidine-nucleoside (Thymidine) phosphorylase	A, B	423	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	Mutation(s): 0
Find proteins for Q5SHF9 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)) Go to UniProtKB:  Q5SHF9

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
CL	A, B	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.8 Å
• R-Value Free: 0.222 
• R-Value Work: 0.198 
• Space Group: P 1 2₁ 1

Unit Cell:

Length (Å)	Angle (°)
a = 58.828	α = 90.00
b = 76.234	β = 91.26
c = 103.862	γ = 90.00

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
MOLREP	phasing
HKL-2000	data reduction
CNS	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2006-06-30 
• Released Date: 2006-12-30 
• Deposition Author(s): Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History 

• Version 1.0: 2006-12-30
  Type: Initial release
• Version 1.1: 2008-04-30
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Source and taxonomy, Version format compliance