2CLY

Subcomplex of the stator of bovine mitochondrial ATP synthase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.295 
  • R-Value Work: 0.231 
  • R-Value Observed: 0.234 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

On the Structure of the Stator of the Mitochondrial ATP Synthase.

Kane Dickson, V.Silvester, J.A.Fearnley, I.M.Leslie, A.G.W.Walker, J.E.

(2006) EMBO J 25: 2911

  • DOI: 10.1038/sj.emboj.7601177
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • The structure of most of the peripheral stalk, or stator, of the F-ATPase from bovine mitochondria, determined at 2.8 A resolution, contains residues 79-183, 3-123 and 5-70 of subunits b, d and F6, respectively. It consists of a continuous curved alp ...

    The structure of most of the peripheral stalk, or stator, of the F-ATPase from bovine mitochondria, determined at 2.8 A resolution, contains residues 79-183, 3-123 and 5-70 of subunits b, d and F6, respectively. It consists of a continuous curved alpha-helix about 160 A long in the single b-subunit, augmented by the predominantly alpha-helical d- and F6-subunits. The structure occupies most of the peripheral stalk in a low-resolution structure of the F-ATPase. The long helix in subunit b extends from near to the top of the F1 domain to the surface of the membrane domain, and it probably continues unbroken across the membrane. Its uppermost region interacts with the oligomycin sensitivity conferral protein, bound to the N-terminal region of one alpha-subunit in the F1 domain. Various features suggest that the peripheral stalk is probably rigid rather than resembling a flexible rope. It remains unclear whether the transient storage of energy required by the rotary mechanism takes place in the central stalk or in the peripheral stalk or in both domains.


    Related Citations: 
    • The Expression, Purification, Crystallization and Preliminary X-Ray Analysis of a Subcomplex of the Peripheral Stalk of ATP Synthase from Bovine Mitochondria
      Silvester, J.A., Kane Dickson, V., Runswick, M.J., Leslie, A.G.W., Walker, J.E.
      (2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 530

    Organizational Affiliation

    The Medical Research Council Dunn Human Nutrition Unit, Cambridge, UK.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ATP SYNTHASE B CHAIN, MITOCHONDRIALA, D214Bos taurusMutation(s): 0 
Gene Names: ATP5PBATP5FATP5F1
EC: 3.6.3.14
Find proteins for P13619 (Bos taurus)
Explore P13619 
Go to UniProtKB:  P13619
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ATP SYNTHASE D CHAIN, MITOCHONDRIALB, E160Bos taurusMutation(s): 0 
Gene Names: ATP5PDATP5H
EC: 3.6.3.14
Find proteins for P13620 (Bos taurus)
Explore P13620 
Go to UniProtKB:  P13620
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ATP SYNTHASE COUPLING FACTOR 6, MITOCHONDRIALC, F77Bos taurusMutation(s): 0 
Gene Names: ATP5PFATP5J
EC: 3.6.3.14
Find proteins for P02721 (Bos taurus)
Explore P02721 
Go to UniProtKB:  P02721
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.295 
  • R-Value Work: 0.231 
  • R-Value Observed: 0.234 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.499α = 90
b = 79.354β = 93.08
c = 115.665γ = 90
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
SHARPphasing
PHASERphasing
REFMACrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-06-28
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-01-24
    Changes: Source and taxonomy