Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 

Biological assembly 1 assigned by authors and generated by PQS (software)

Biological Assembly 2  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 

Biological assembly 2 assigned by authors and generated by PQS (software)

Macromolecule Content

• Total Structure Weight: 104.82 kDa 
• Atom Count: 4845 
• Modelled Residue Count: 583 
• Deposited Residue Count: 902 
• Unique protein chains: 3

2CLY

Subcomplex of the stator of bovine mitochondrial ATP synthase

• PDB DOI: 10.2210/pdb2CLY/pdb

• Classification: HYDROLASE
• Organism(s): Bos taurus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2006-05-03 Released: 2006-06-28 
• Deposition Author(s): Kane Dickson, V., Silvester, J.A., Fearnley, I.M., Leslie, A.G.W., Walker, J.E.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Free: 0.295 
• R-Value Work: 0.231 
• R-Value Observed: 0.234 

Literature

On the Structure of the Stator of the Mitochondrial ATP Synthase.

Kane Dickson, V., Silvester, J.A., Fearnley, I.M., Leslie, A.G.W., Walker, J.E.

(2006) EMBO J 25: 2911

• PubMed: 16791136 
• DOI: 10.1038/sj.emboj.7601177
• Primary Citation of Related Structures:  
  2CLY


• PubMed Abstract: 
  

The structure of most of the peripheral stalk, or stator, of the F-ATPase from bovine mitochondria, determined at 2.8 A resolution, contains residues 79-183, 3-123 and 5-70 of subunits b, d and F6, respectively. It consists of a continuous curved alpha-helix about 160 A long in the single b-subunit, augmented by the predominantly alpha-helical d- and F6-subunits. The structure occupies most of the peripheral stalk in a low-resolution structure of the F-ATPase. The long helix in subunit b extends from near to the top of the F1 domain to the surface of the membrane domain, and it probably continues unbroken across the membrane. Its uppermost region interacts with the oligomycin sensitivity conferral protein, bound to the N-terminal region of one alpha-subunit in the F1 domain. Various features suggest that the peripheral stalk is probably rigid rather than resembling a flexible rope. It remains unclear whether the transient storage of energy required by the rotary mechanism takes place in the central stalk or in the peripheral stalk or in both domains.

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Related Citations: 

• The Expression, Purification, Crystallization and Preliminary X-Ray Analysis of a Subcomplex of the Peripheral Stalk of ATP Synthase from Bovine Mitochondria
  Silvester, J.A., Kane Dickson, V., Runswick, M.J., Leslie, A.G.W., Walker, J.E.
  (2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 530

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Organizational Affiliation: 

The Medical Research Council Dunn Human Nutrition Unit, Cambridge, UK.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP SYNTHASE B CHAIN, MITOCHONDRIAL	A, D	214	Bos taurus	Mutation(s): 0  Gene Names: ATP5PB, ATP5F, ATP5F1 EC: 3.6.3.14
UniProt
Find proteins for P13619 (Bos taurus) Explore P13619  Go to UniProtKB:  P13619

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP SYNTHASE D CHAIN, MITOCHONDRIAL	B, E	160	Bos taurus	Mutation(s): 0  Gene Names: ATP5PD, ATP5H EC: 3.6.3.14
UniProt
Find proteins for P13620 (Bos taurus) Explore P13620  Go to UniProtKB:  P13620

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP SYNTHASE COUPLING FACTOR 6, MITOCHONDRIAL	C, F	77	Bos taurus	Mutation(s): 0  Gene Names: ATP5PF, ATP5J EC: 3.6.3.14
UniProt
Find proteins for P02721 (Bos taurus) Explore P02721  Go to UniProtKB:  P02721

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Free: 0.295 
• R-Value Work: 0.231 
• R-Value Observed: 0.234 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.499	α = 90
b = 79.354	β = 93.08
c = 115.665	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
SHARP	phasing
PHASER	phasing
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2006-05-03 
• Released Date: 2006-06-28 
Deposition Author(s): Kane Dickson, V., Silvester, J.A., Fearnley, I.M., Leslie, A.G.W., Walker, J.E.

Revision History  

• Version 1.0: 2006-06-28
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2018-01-24
  Changes: Source and taxonomy