2C0T

Src family kinase Hck with bound inhibitor A-641359

• PDB DOI:  https://doi.org/10.2210/pdb2C0T/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): Yes 


• Deposited: 2005-09-07 Released: 2006-09-20 
• Deposition Author(s): Borhani, D.W., Burchat, A., Calderwood, D.J., Hirst, G.C., Li, B., Loew, A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 0.253 
• R-Value Work: 0.194 
• R-Value Observed: 0.197 

Literature

Discovery of A-770041, a Src-Family Selective Orally Active Lck Inhibitor that Prevents Organ Allograft Rejection.

Burchat, A., Borhani, D.W., Calderwood, D.J., Hirst, G.C., Li, B., Stachlewitz, R.F.

(2006) Bioorg Med Chem Lett 16: 118

• PubMed: 16216497 
• DOI: https://doi.org/10.1016/j.bmcl.2005.09.039
• Primary Citation of Related Structures:  
  2C0I, 2C0O, 2C0T


• PubMed Abstract: 
  

We describe the identification, SAR, and pharmacology of the src-family selective lck inhibitor A-770041 that prolongs the survival of major histocompatibility mismatched allografts in models of solid organ transplant rejection for greater than 65 days.

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Related Citations: 

• A-420983: A Potent, Orally Active Inhibitor of Lck with Efficacy in a Model of Transplant Rejection
  Borhani, D.W., Calderwood, D.J., Friedman, M.M., Hirst, G.C., Li, B., Leung, A.K.W., Mcrae, B., Ratnofsky, S., Ritter, K., Waegell, W.
  (2004) Bioorg Med Chem Lett 14: 2613

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Organizational Affiliation: 

Abbott Bioresearch Center, 100 Research Drive, Worcester, MA 01605-5314, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 105.32 kDa 
• Atom Count: 7,225 
• Modelled Residue Count: 858 
• Deposited Residue Count: 908 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TYROSINE-PROTEIN KINASE HCK	A, B	454	Homo sapiens	Mutation(s): 3  Gene Names: HCK EC: 2.7.1.112 (PDB Primary Data), 2.7.10.2 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P08631 (Homo sapiens) Explore P08631  Go to UniProtKB:  P08631
PHAROS:  P08631

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
L3G	C [auth A], F [auth B]	N-(4-{4-AMINO-1-[1-(TETRAHYDRO-2H-PYRAN-4-YL)PIPERIDIN-4-YL]-1H-PYRAZOLO[3,4-D]PYRIMIDIN-3-YL}-2-METHOXYPHENYL)-1-METHYL-1H-INDOLE-2-CARBOXAMIDE C32 H36 N8 O3 CMFPSTWYLODPNE-UHFFFAOYSA-N
CA	D [auth A], E [auth A], G [auth B], H [auth B]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
PTR	A, B	L-PEPTIDE LINKING	C9 H12 N O6 P		TYR

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 0.253 
• R-Value Work: 0.194 
• R-Value Observed: 0.197 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.861	α = 90
b = 72.909	β = 95.87
c = 180.002	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
AMoRE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-09-20 
Deposition Author(s): Borhani, D.W., Burchat, A., Calderwood, D.J., Hirst, G.C., Li, B., Loew, A.

Revision History  

• Version 1.0: 2006-09-20
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.2: 2019-03-06
  Changes: Data collection, Derived calculations, Experimental preparation, Other
• Version 1.3: 2019-05-08
  Changes: Data collection, Experimental preparation