Download MendeleyThe Conserved Arginine Proximal to the Essential Calcium of Bacillus Subtilis Pectate Lyase Stabilizes the Transition State
Pickersgill, R., Worboys, K., Scott, M., Cummings, N., Cooper, A., Jenkins, J., Smith, D.To be published.
2BSP
BACILLUS SUBTILIS PECTATE LYASE R279K MUTANT
- PDB DOI: 10.2210/pdb2BSP/pdb
- Classification: LYASE
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 1998-07-31 Released: 1998-08-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.225
- R-Value Work: 0.196
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PROTEIN (PECTATE LYASE) | A | 420 | Bacillus subtilis | Mutation(s): 1 EC: 4.2.2.2 |  |
UniProt | |||||
Find proteins for P39116 (Bacillus subtilis (strain 168)) Explore P39116 Go to UniProtKB: P39116 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P39116 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | B [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.225
- R-Value Work: 0.196
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.43 | α = 90 |
| b = 69.71 | β = 112.65 |
| c = 60.23 | γ = 90 |
| Software Name | Purpose |
|---|---|
| X-PLOR | model building |
| REFMAC | refinement |
| DENZO | data reduction |
| CCP4 | data scaling |
| ROTAVATA | data scaling |
| X-PLOR | phasing |
Entry History
Deposition Data
- Released Date: 1998-08-12 Deposition Author(s): Pickersgill, R.
Revision History (Full details and data files)
- Version 1.0: 1998-08-12
Type: Initial release - Version 1.1: 2007-10-16
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-04
Changes: Refinement description - Version 1.4: 2021-11-03
Changes: Database references, Derived calculations
