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Download EndnoteCrystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii
Kawamura, T., Watanabe, N., Tanaka, I.To be published.
2ZU8
Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii
- DOI: 10.2210/pdb2ZU8/pdb
- Classification: TRANSFERASE
- Organism(s): Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
- Expression System: Escherichia coli
- Deposited: 2008-10-14 Released: 2009-10-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.4 Å
- R-Value Free: 0.272
- R-Value Work: 0.226
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Mannosyl-3-phosphoglycerate synthase | A, B | 394 | Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) | Mutation(s): 0 Gene Names: mngA EC: 2.4.1.217 |
Find proteins for O58689 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Go to UniProtKB: O58689 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GDD Query on GDD | A, B | GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE C16 H25 N5 O16 P2 MVMSCBBUIHUTGJ-GDJBGNAASA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.4 Å
- R-Value Free: 0.272
- R-Value Work: 0.226
- Space Group: P 1 21 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 54.238 | α = 90.00 |
| b = 84.993 | β = 101.91 |
| c = 83.592 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data scaling |
| CNS | refinement |
| PHASER | phasing |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Deposited Date: 2008-10-14
- Released Date: 2009-10-27
- Deposition Author(s): Kawamura, T., Watanabe, N., Tanaka, I.
Revision History
- Version 1.0: 2009-10-27
Type: Initial release - Version 1.1: 2011-07-13
Type: Version format compliance
