Download MendeleyX-Ray Snapshots of a Hydroxylation Mechanism of Tyrosinase
Matoba, Y., Yoshitsu, H., Jeon, H.-J., Oda, K., Noda, M., Kumagai, T., Sugiyama, M.To be published.
2ZMY
Crystal structure of the met2-form of the copper-bound tyrosinase in complex with a caddie protein from Streptomyces castaneoglobisporus obtained by soaking in cupric sulfate solution for 80 hours
- PDB DOI: https://doi.org/10.2210/pdb2ZMY/pdb
- Classification: OXIDOREDUCTASE/METAL TRANSPORT
- Organism(s): Streptomyces castaneoglobisporus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-04-21 Released: 2009-05-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.214
- R-Value Work: 0.169
- R-Value Observed: 0.169
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tyrosinase | 281 | Streptomyces castaneoglobisporus | Mutation(s): 0 Gene Names: TYRC EC: 1.14.18.1 |  | |
UniProt | |||||
Find proteins for Q83WS2 (Streptomyces castaneoglobisporus) Explore Q83WS2 Go to UniProtKB: Q83WS2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q83WS2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CADDIE | 134 | Streptomyces castaneoglobisporus | Mutation(s): 0 Gene Names: ORF378 |  | |
UniProt | |||||
Find proteins for Q83WS1 (Streptomyces castaneoglobisporus) Explore Q83WS1 Go to UniProtKB: Q83WS1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q83WS1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CU Query on CU | C [auth A], D [auth A], E [auth A], F [auth A], K [auth B] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |  | ||
| NO3 Query on NO3 | G [auth A] H [auth A] I [auth A] J [auth A] L [auth B] | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.214
- R-Value Work: 0.169
- R-Value Observed: 0.169
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.74 | α = 90 |
| b = 97.55 | β = 90 |
| c = 54.97 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELX | model building |
| SHELXL-97 | refinement |
| BSS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2009-05-05 Deposition Author(s): Matoba, Y., Sugiyama, M.
Revision History (Full details and data files)
- Version 1.0: 2009-05-05
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
