Macromolecule Content

Total Structure Weight: 42.49 kDa
Atom Count: 2,940
Modelled Residue Count: 361
Deposited Residue Count: 369
Unique protein chains: 1

2ZKL

Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus

PDB DOI: 10.2210/pdb2ZKL/pdb

Classification: ISOMERASE
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-03-25 Released: 2009-03-31
Deposition Author(s): Miyafusa, T., Tanaka, Y., Yao, M., Tanaka, I., Tsumoto, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.61 Å
R-Value Free: 0.273
R-Value Work: 0.238
R-Value Observed: 0.238

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of capsular polysaccharide assembling protein from Staphylococcus aureus

Miyafusa, T., Tanaka, Y., Kuroda, M., Yao, M., Watanabe, N., Ohta, T., Tanaka, I., Tsumoto, K.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsular polysaccharide synthesis enzyme Cap5F	A	369	Staphylococcus aureus	Mutation(s): 0 Gene Names: capF
UniProt
Find proteins for A0A0H3JP37 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore A0A0H3JP37 Go to UniProtKB: A0A0H3JP37
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0H3JP37
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A]	C [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.61 Å
R-Value Free: 0.273
R-Value Work: 0.238
R-Value Observed: 0.238
Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 119.636	α = 90
b = 119.636	β = 90
c = 129.454	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
ugiui	data collection
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2009-03-31

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2009-03-31
Type: Initial release
Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.