2Z9H | pdb_00002z9h

Ethanolamine utilization protein, EutN

PDB DOI: https://doi.org/10.2210/pdb2Z9H/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Escherichia coli K-12
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-09-20 Released: 2007-10-02
Deposition Author(s): Tanaka, S., Sawaya, M.R., Yeates, T.O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.71 Å
R-Value Free:
0.302 (Depositor), 0.302 (DCC)
R-Value Work:
0.243 (Depositor), 0.245 (DCC)
R-Value Observed:
0.246 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

The crystal structure of ethanolamine utilization protein EutN from E. coli

Tanaka, S., Sawaya, M.R., Kerfeld, C.A., Yeates, T.O.

To be published.

Macromolecule Content

Total Structure Weight: 66.74 kDa
Atom Count: 4,083
Modeled Residue Count: 551
Deposited Residue Count: 618
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ethanolamine utilization protein eutN	A, B, C, D, E A, B, C, D, E, F	103	Escherichia coli K-12	Mutation(s): 0 Gene Names: eutN, cchB
UniProt
Find proteins for P0AEJ8 (Escherichia coli (strain K12)) Explore P0AEJ8 Go to UniProtKB: P0AEJ8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0AEJ8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MRD Query on MRD Download:Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain I [auth A] SDF format, chain K [auth F] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A] MOL2 format, chain K [auth F] mmCIF format, chain G [auth A] mmCIF format, chain H [auth A] mmCIF format, chain I [auth A] mmCIF format, chain K [auth F]	G [auth A], H [auth A], I [auth A], K [auth F]	(4R)-2-METHYLPENTANE-2,4-DIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-RXMQYKEDSA-N		Interactions Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain K [auth F] Interactions & Density Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain K [auth F]
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain J [auth D] MOL2 format, chain J [auth D] mmCIF format, chain J [auth D]	J [auth D]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain J [auth D] Interactions & Density Focus chain J [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.71 Å
R-Value Free: 0.302 (Depositor), 0.302 (DCC)
R-Value Work: 0.243 (Depositor), 0.245 (DCC)
R-Value Observed: 0.246 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.281	α = 90
b = 66.54	β = 119.25
c = 72.004	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
CrystalClear	data collection

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-10-02

Deposition Author(s):

Tanaka, S.

Sawaya, M.R.

Yeates, T.O.

Revision History (Full details and data files)

Version 1.0: 2007-10-02
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance
Version 1.2: 2017-10-11
Changes: Refinement description
Version 1.3: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description

2Z9H | pdb_00002z9h

Ethanolamine utilization protein, EutN

Literature

The crystal structure of ethanolamine utilization protein EutN from E. coli

Biological Assembly 1

Macromolecules

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

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