2Z6N

Crystal Structure of Carbonmonoxy Hemoglobin D from the Aldabra Giant Tortoise, Geochelone gigantea


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.185 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of the Ligated Hemoglobin D from the Aldabra Giant Tortoise, Geochelone gigantea

Kuwada, T.Hasegawa, T.Sato, I.Ishikawa, K.Shishikura, F.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hemoglobin D subunit alpha
A
141Aldabrachelys giganteaMutation(s): 0 
Find proteins for P83134 (Aldabrachelys gigantea)
Go to UniProtKB:  P83134
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Hemoglobin A/D subunit beta
B
146Aldabrachelys giganteaMutation(s): 0 
Find proteins for P83133 (Aldabrachelys gigantea)
Go to UniProtKB:  P83133
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HEM
Query on HEM

Download SDF File 
Download CCD File 
A, B
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
CMO
Query on CMO

Download SDF File 
Download CCD File 
A, B
CARBON MONOXIDE
C O
UGFAIRIUMAVXCW-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.185 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 112.355α = 90.00
b = 62.104β = 110.22
c = 53.987γ = 90.00
Software Package:
Software NamePurpose
CNXrefinement
CrystalCleardata reduction
CrystalCleardata collection
CrystalCleardata scaling
CNXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-08-28
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2018-06-20
    Type: Data collection, Database references