2Z5F | pdb_00002z5f

Human sulfotransferase Sult1b1 in complex with PAP

PDB DOI: https://doi.org/10.2210/pdb2Z5F/pdb
Entry: 2Z5F supersedes: 1XV1

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-07-07 Released: 2007-08-14
Deposition Author(s): Dombrovski, L., Pegasova, T., Wu, H., Loppnau, P., Edwards, A.M., Arrowsmith, C.H., Sundstrom, M., Plotnikov, A.N., Bochkarev, A., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.241 (Depositor), 0.231 (DCC)
R-Value Work:
0.176 (Depositor), 0.176 (DCC)
R-Value Observed:
0.180 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Crystal structures of human sulfotransferases SULT1B1 and SULT1C1 complexed with the cofactor product adenosine-3'-5'-diphosphate (PAP)

Dombrovski, L., Dong, A., Bochkarev, A., Plotnikov, A.N.

(2006) Proteins 64: 1091-1094

PubMed: 16804942 Search on PubMed
DOI: https://doi.org/10.1002/prot.21048
Primary Citation Related Structures:
2Z5F, 3BFX

Organizational Affiliation

Structural Genomics Consortium, University of Toronto, Toronto, Ontario, Canada.

Macromolecule Content

Total Structure Weight: 71.1 kDa
Atom Count: 5,274
Modeled Residue Count: 586
Deposited Residue Count: 596
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sulfotransferase family cytosolic 1B member 1	A, B	298	Homo sapiens	Mutation(s): 0 Gene Names: SULT1B1 EC: 2.8.2 (PDB Primary Data), 2.8.2.1 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for O43704 (Homo sapiens) Explore O43704 Go to UniProtKB: O43704
PHAROS: O43704 GTEx: ENSG00000173597
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O43704
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A3P Query on A3P Download:Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain C [auth A] mmCIF format, chain D [auth A] mmCIF format, chain C [auth A]	C [auth A], D [auth A]	ADENOSINE-3'-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ WHTCPDAXWFLDIH-KQYNXXCUSA-N		Interactions Focus chain C [auth A] Focus chain D [auth A] Interactions & Density Focus chain C [auth A] Focus chain D [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.241 (Depositor), 0.231 (DCC)
R-Value Work: 0.176 (Depositor), 0.176 (DCC)
R-Value Observed: 0.180 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.813	α = 90
b = 77.072	β = 90
c = 189.385	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
CrystalClear	data collection
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2007-08-14

Deposition Author(s):

Structural Genomics Consortium (SGC)

This entry supersedes: 1XV1

Revision History (Full details and data files)

Version 1.0: 2007-08-14
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Refinement description