2Z23

Crystal structure of Y.pestis oligo peptide binding protein OppA with tri-lysine ligand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.210 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structures of OppA and PstS from Yersinia pestis indicate variability of interactions with transmembrane domains.

Tanabe, M.Mirza, O.Bertrand, T.Atkins, H.S.Titball, R.W.Iwata, S.Brown, K.A.Byrne, B.

(2007) Acta Crystallogr.,Sect.D 63: 1185-1193

  • DOI: 10.1107/S0907444907048299
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Bacterial ATP-binding cassette (ABC) transport systems couple ATP hydrolysis with the uptake and efflux of a wide range of substances across bacterial membranes. These systems are comprised of transmembrane domains, nucleotide binding domains and, in ...

    Bacterial ATP-binding cassette (ABC) transport systems couple ATP hydrolysis with the uptake and efflux of a wide range of substances across bacterial membranes. These systems are comprised of transmembrane domains, nucleotide binding domains and, in the case of uptake systems, periplasmic binding proteins responsible for binding and presentation of substrate to the transmembrane domains. In pathogenic bacteria, ABC systems are known to play roles in virulence and pathogenicity and the surface localization of some components has made them attractive targets for both vaccine and anti-infective development. Here, the crystallization of five proteins (OppA, PstS, PiuA, YrbD and CysP) from Yersinia pestis, the causative agent of plague, are reported that diffracted to resolution limits ranging from 1.6 to 5 A. The first crystal structures of ABC system components from Y. pestis, OppA and PstS, are also reported here as complexes with their substrates. Comparisons of these two structures with known structures of related proteins suggest that these proteins possess versatility in substrate recognition and variations in protein-protein interactions with their cognate transmembrane domains.


    Organizational Affiliation

    Membrane Protein Crystallography, Division of Molecular Biosciences, Imperial College London, London SW7 2AZ, England.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Periplasmic oligopeptide-binding protein
A
517Yersinia pestisMutation(s): 0 
Gene Names: oppA3
Find proteins for A0A0H2W5P5 (Yersinia pestis)
Go to UniProtKB:  A0A0H2W5P5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
peptide (LYS)(LYS)(LYS)
B
3N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.210 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 71.827α = 90.00
b = 90.637β = 90.00
c = 93.702γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
ADSCdata collection
CNSrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-10-30
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Source and taxonomy, Version format compliance