2Z0W | pdb_00002z0w

Crystal structure of the 2nd CAP-Gly domain in human Restin-like protein 2 reveals a swapped-dimer

• PDB DOI: https://doi.org/10.2210/pdb2Z0W/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2007-05-07 Released: 2007-11-13 
• Deposition Author(s): Saito, K., Yoshikawa, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.246 (Depositor), 0.250 (DCC) 
• R-Value Work: 
  0.225 (Depositor), 0.230 (DCC) 

Literature

Crystal structure of the 2nd CAP-Gly domain in human Restin-like protein 2 reveals a swapped-dimer

Saito, K., Yoshikawa, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Kigawa, T., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 10.2 kDa 
• Atom Count: 583 
• Modeled Residue Count: 72 
• Deposited Residue Count: 96 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CAP-Gly domain-containing linker protein 4	A	96	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N3C7 (Homo sapiens) Explore Q8N3C7  Go to UniProtKB:  Q8N3C7
PHAROS:  Q8N3C7 GTEx:  ENSG00000115295

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.246 (Depositor), 0.250 (DCC) 
• R-Value Work:  0.225 (Depositor), 0.230 (DCC) 

Space Group: I 4 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.173	α = 90
b = 79.173	β = 90
c = 62.012	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data collection
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-11-13 
Deposition Author(s): Saito, K., Yoshikawa, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2007-11-13
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2024-03-13
  Changes: Data collection, Database references