2Z0S | pdb_00002z0s

Crystal structure of putative exosome complex RNA-binding protein

• PDB DOI: https://doi.org/10.2210/pdb2Z0S/pdb

• Classification: RNA BINDING PROTEIN
• Organism(s): Aeropyrum pernix
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-05-07 Released: 2007-11-13 
• Deposition Author(s): Murayama, K., Kato-Murayama, M., Takemoto, C., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.20 Å
• R-Value Free: 
  0.331 (Depositor), 0.290 (DCC) 
• R-Value Work: 
  0.277 (Depositor), 0.260 (DCC) 
• R-Value Observed: 
  0.277 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of putative exosome complex RNA-binding protein

Murayama, K., Kato-Murayama, M., Takemoto, C., Terada, T., Shirouzu, M., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 26.1 kDa 
• Atom Count: 1,377 
• Modeled Residue Count: 175 
• Deposited Residue Count: 235 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable exosome complex RNA-binding protein 1	A	235	Aeropyrum pernix	Mutation(s): 0
UniProt
Find proteins for Q9YC02 (Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)) Explore Q9YC02  Go to UniProtKB:  Q9YC02

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.20 Å
• R-Value Free:  0.331 (Depositor), 0.290 (DCC) 
• R-Value Work:  0.277 (Depositor), 0.260 (DCC) 
• R-Value Observed: 0.277 (Depositor) 

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 97.414	α = 90
b = 97.414	β = 90
c = 136.548	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-11-13 
Deposition Author(s): Murayama, K., Kato-Murayama, M., Takemoto, C., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2007-11-13
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-11-01
  Changes: Data collection, Database references, Refinement description