2YZ2 | pdb_00002yz2

Crystal structure of the ABC transporter in the cobalt transport system

PDB DOI: https://doi.org/10.2210/pdb2YZ2/pdb

Classification: HYDROLASE
Organism(s): Thermotoga maritima MSB8
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-05-02 Released: 2007-11-06
Deposition Author(s): Ethayathullah, A.S., Bessho, Y., Padmanabhan, B., Singh, T.P., Kaur, P., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.294 (Depositor)
R-Value Work:
0.214 (Depositor)
R-Value Observed:
0.218 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2YZ2

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of the ABC transporter in the cobalt transport system

Ethayathullah, A.S., Bessho, Y., Padmanabhan, B., Singh, T.P., Kaur, P., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 60.55 kDa
Atom Count: 4,716
Modeled Residue Count: 529
Deposited Residue Count: 532
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative ABC transporter ATP-binding protein TM_0222	A, B	266	Thermotoga maritima MSB8	Mutation(s): 0 EC: 3.6.3 (PDB Primary Data), 7 (UniProt)
UniProt
Find proteins for Q9WY65 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9WY65 Go to UniProtKB: Q9WY65
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9WY65
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.294 (Depositor)
R-Value Work: 0.214 (Depositor)
R-Value Observed: 0.218 (Depositor)

Space Group: P 6₄ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 148.499	α = 90
b = 148.499	β = 90
c = 106.967	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
ADSC	data collection
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-11-06

Deposition Author(s):

Ethayathullah, A.S.

Padmanabhan, B.

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-11-06
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.2: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.