2YYV | pdb_00002yyv

Crystal structure of uncharacterized conserved protein from Thermotoga maritima

PDB DOI: https://doi.org/10.2210/pdb2YYV/pdb

Classification: HYDROLASE
Organism(s): Thermotoga maritima MSB8
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-05-02 Released: 2007-11-06
Deposition Author(s): Nakagawa, N., Nakamura, Y., Bessho, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free:
0.233 (Depositor), 0.233 (DCC)
R-Value Work:
0.221 (Depositor), 0.219 (DCC)
R-Value Observed:
0.221 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2YYV

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of uncharacterized conserved protein from Thermotoga maritima

Nakagawa, N., Nakamura, Y., Bessho, Y., Yokoyama, S., Kuramitsu, S.

To be published.

Macromolecule Content

Total Structure Weight: 49.78 kDa
Atom Count: 3,679
Modeled Residue Count: 447
Deposited Residue Count: 454
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable 2-phosphosulfolactate phosphatase	A, B	227	Thermotoga maritima MSB8	Mutation(s): 0 EC: 3.1.3.71
UniProt
Find proteins for Q9WZQ4 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9WZQ4 Go to UniProtKB: Q9WZQ4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9WZQ4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.233 (Depositor), 0.233 (DCC)
R-Value Work: 0.221 (Depositor), 0.219 (DCC)
R-Value Observed: 0.221 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.585	α = 90
b = 72.414	β = 90
c = 178.483	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
DPS	data reduction
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-11-06

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-11-06
Type: Initial release
Version 1.1: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance
Version 1.2: 2024-11-20
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.