Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide
Nakamura, Y., Umehara, T., Padmanabhan, B., Yokoyama, S.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Pygopus homolog 1 | 67 | Mus musculus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for Q9D0P5 (Mus musculus) Explore Q9D0P5  Go to UniProtKB:  Q9D0P5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9D0P5 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
H3K4Me3 peptide | C [auth P] | 8 | N/A | Mutation(s): 0  | |
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | D [auth A], E [auth A], F [auth B], G [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Modified Residues 2 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET | |
M3L Query on M3L | C [auth P] | L-PEPTIDE LINKING | C9 H21 N2 O2 | LYS |
Length ( Å ) | Angle ( ˚ ) |
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a = 59.518 | α = 90 |
b = 59.518 | β = 90 |
c = 95.853 | γ = 90 |
Software Name | Purpose |
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CNS | refinement |
ADSC | data collection |
HKL-2000 | data reduction |
SCALEPACK | data scaling |
MOLREP | phasing |