2YW8

Crystal structure of human RUN and FYVE domain-containing protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.198 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of human RUN and FYVE domain-containing protein

Wang, H.Kishishita, S.Murayama, T.Takemoto, C.Terada, T.Chen, L.Fu, Z.Q.Chrzas, J.Wang, B.C.Shirouzu, M.Yokoyama, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RUN and FYVE domain-containing protein 1
A
82Homo sapiensMutation(s): 0 
Gene Names: RUFY1 (RABIP4, ZFYVE12)
Find proteins for Q96T51 (Homo sapiens)
Go to Gene View: RUFY1
Go to UniProtKB:  Q96T51
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.198 
  • Space Group: P 43 3 2
Unit Cell:
Length (Å)Angle (°)
a = 115.150α = 90.00
b = 115.150β = 90.00
c = 115.150γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
CNSrefinement
HKL-2000data scaling
MOLREPphasing
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-04-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance