2YUM | pdb_00002yum

Solution structure of the Myb-like DNA-binding domain of human ZZZ3 protein

PDB DOI: https://doi.org/10.2210/pdb2YUM/pdb
BMRB: 10193

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2007-04-06 Released: 2007-10-09
Deposition Author(s): Abe, H., Tochio, N., Miyamoto, K., Saito, K., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2YUM

This is version 1.3 of the entry. See complete history.

Literature

Solution structure of the Myb-like DNA-binding domain of human ZZZ3 protein

Abe, H., Tochio, N., Miyamoto, K., Saito, K., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 8.3 kDa
Atom Count: 584
Modeled Residue Count: 75
Deposited Residue Count: 75
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Zinc finger ZZ-type-containing protein 3	A	75	Homo sapiens	Mutation(s): 0 Gene Names: ZZZ3
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IYH5 (Homo sapiens) Explore Q8IYH5 Go to UniProtKB: Q8IYH5
PHAROS: Q8IYH5 GTEx: ENSG00000036549
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8IYH5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-10-09

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-10-09
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-16
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.