2YQ2

Structure of BVDV1 envelope glycoprotein E2, pH8

• PDB DOI: https://doi.org/10.2210/pdb2YQ2/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Bovine viral diarrhea virus 1
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2012-11-04 Released: 2013-01-16 
• Deposition Author(s): El Omari, K., Iourin, O., Harlos, K., Grimes, J.M., Stuart, D.I.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.58 Å
• R-Value Free: 0.253 
• R-Value Work: 0.240 
• R-Value Observed: 0.241 

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 77.64 kDa 
• Atom Count: 5,380 
• Modelled Residue Count: 662 
• Deposited Residue Count: 674 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
BVDV1 E2	A, B	337	Bovine viral diarrhea virus 1	Mutation(s): 0
UniProt
Find proteins for Q01499 (Bovine viral diarrhea virus (strain SD-1)) Explore Q01499  Go to UniProtKB:  Q01499

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	C [auth A], D [auth A], E [auth A], F [auth B], G [auth B], H [auth B]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.58 Å
• R-Value Free: 0.253 
• R-Value Work: 0.240 
• R-Value Observed: 0.241 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 132.18	α = 90
b = 47.593	β = 108.15
c = 159.29	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-01-16 
Deposition Author(s): El Omari, K., Iourin, O., Harlos, K., Grimes, J.M., Stuart, D.I.

Revision History  

• Version 1.0: 2013-01-16
  Type: Initial release
  
• Version 1.1: 2013-02-20
  Changes: Database references
• Version 1.2: 2019-04-03
  Changes: Data collection, Derived calculations, Other, Source and taxonomy
• Version 1.3: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Data collection, Derived calculations, Other, Structure summary