2YPD

Crystal structure of the Jumonji domain of human Jumonji domain containing 1C protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.215 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of the Jumonji Domain of Human Jumonji Domain Containing 1C Protein

Vollmar, M.Johansson, C.Krojer, T.Strain-Damerell, C.Froese, S.Williams, E.Coutandin, D.von Delft, F.Weigelt, J.Arrowsmith, C.H.Bountra, C.Edwards, A.Oppermann, U.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PROBABLE JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROT EIN 2C
A, B
392Homo sapiensGene Names: JMJD1C (JHDM2C, KIAA1380, TRIP8)
EC: 1.14.11.-
Find proteins for Q15652 (Homo sapiens)
Go to Gene View: JMJD1C
Go to UniProtKB:  Q15652
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
EMT
Query on EMT

Download SDF File 
Download CCD File 
A, B
2-(ETHYLMERCURI-THIO)-BENZOIC ACID
C9 H10 Hg O2 S
HXQVQGWHFRNKMS-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.215 
  • Space Group: P 2 21 21
Unit Cell:
Length (Å)Angle (°)
a = 45.718α = 90.00
b = 112.206β = 90.00
c = 165.173γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
REFMACrefinement
autoSHARPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2012-12-12
    Type: Initial release
  • Version 1.1: 2014-09-17
    Type: Atomic model, Derived calculations, Non-polymer description, Other, Source and taxonomy
  • Version 1.2: 2018-01-24
    Type: Advisory, Database references