2YJD

Stapled peptide bound to Estrogen Receptor Beta


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Design and Structure of Stapled Peptides Binding to Estrogen Receptors.

Phillips, C.Roberts, L.R.Schade, M.Bazin, R.Bent, A.Davies, N.L.Moore, R.Pannifer, A.D.Pickford, A.R.Prior, S.H.Read, C.M.Scott, A.Brown, D.G.Xu, B.Irving, S.L.

(2011) J.Am.Chem.Soc. 133: 9696

  • DOI: 10.1021/ja202946k
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Synthetic peptides that specifically bind nuclear hormone receptors offer an alternative approach to small molecules for the modulation of receptor signaling and subsequent gene expression. Here we describe the design of a series of novel stapled pep ...

    Synthetic peptides that specifically bind nuclear hormone receptors offer an alternative approach to small molecules for the modulation of receptor signaling and subsequent gene expression. Here we describe the design of a series of novel stapled peptides that bind the coactivator peptide site of estrogen receptors. Using a number of biophysical techniques, including crystal structure analysis of receptor-stapled peptide complexes, we describe in detail the molecular interactions and demonstrate that all-hydrocarbon staples modulate molecular recognition events. The findings have implications for the design of stapled peptides in general.


    Organizational Affiliation

    Department of Chemistry, Pfizer, Sandwich CT13 9NJ, UK. Chris.Phillips@famco.co.uk




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ESTROGEN RECEPTOR BETA
A, B
240Homo sapiensMutation(s): 0 
Gene Names: ESR2 (ESTRB, NR3A2)
Find proteins for Q92731 (Homo sapiens)
Go to Gene View: ESR2
Go to UniProtKB:  Q92731
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
STAPLED PEPTIDE
C, D
13Homo sapiensMutation(s): 0 
Gene Names: NCOA2 (BHLHE75, SRC2, TIF2)
Find proteins for Q15596 (Homo sapiens)
Go to Gene View: NCOA2
Go to UniProtKB:  Q15596
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
YJD
Query on YJD

Download SDF File 
Download CCD File 
A, B
4-(2-PROPAN-2-YLOXYBENZIMIDAZOL-1-YL)PHENOL
C16 H16 N2 O2
IRWOSCQWORJIQP-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  3 Unique
IDChainsTypeFormula2D DiagramParent
NH2
Query on NH2
C, D
NON-POLYMERH2 N

--

MK8
Query on MK8
C, D
L-peptide linkingC7 H15 N O2LEU
ACE
Query on ACE
C, D
NON-POLYMERC2 H4 O

--

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.225 
  • Space Group: I 4
Unit Cell:
Length (Å)Angle (°)
a = 102.620α = 90.00
b = 102.620β = 90.00
c = 102.620γ = 90.00
Software Package:
Software NamePurpose
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-08-03
    Type: Initial release
  • Version 1.1: 2017-01-25
    Type: Atomic model, Other