2YEI

HSP90 inhibitors and drugs from fragment and virtual screening


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.390 
  • R-Value Work: 0.252 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

How Well Can Fragments Explore Accessed Chemical Space? a Case Study from Heat Shock Protein 90.

Roughley, S.D.Hubbard, R.E.

(2011) J.Med.Chem. 54: 3989


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HEAT SHOCK PROTEIN HSP 90-ALPHA
A
252Homo sapiensGene Names: HSP90AA1 (HSP90A, HSPC1, HSPCA)
Find proteins for P07900 (Homo sapiens)
Go to Gene View: HSP90AA1
Go to UniProtKB:  P07900
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
XQI
Query on XQI

Download SDF File 
Download CCD File 
A
METHYL 2-(3,5-DIHYDROXYPHENYL)ETHANOATE
C9 H10 O4
LMLSBPHXMGSGCR-UHFFFAOYSA-N
 Ligand Interaction
XQK
Query on XQK

Download SDF File 
Download CCD File 
A
METHYL 5-ISOXAZOL-5-YL-3-METHYL-1H-PYRAZOLE-4-CARBOXYLATE
C9 H9 N3 O3
ATKIWUMRVKGZOO-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
XQIIC50: 490000 nM (92) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.390 
  • R-Value Work: 0.252 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 66.801α = 90.00
b = 90.319β = 90.00
c = 98.229γ = 90.00
Software Package:
Software NamePurpose
AMoREphasing
d*TREKdata scaling
REFMACrefinement
d*TREKdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-06-15
    Type: Initial release
  • Version 1.1: 2011-06-23
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance