2Y9R | pdb_00002y9r

Crystal structure of the M10 domain of Titin

PDB DOI: https://doi.org/10.2210/pdb2Y9R/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-02-16 Released: 2011-03-02
Deposition Author(s): Pernigo, S., Fukuzawa, A., Gautel, M., Steiner, R.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.241 (Depositor), 0.246 (DCC)
R-Value Work:
0.194 (Depositor), 0.199 (DCC)
R-Value Observed:
0.196 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of the Titin M10 Domain

Pernigo, S., Fukuzawa, A., Gautel, M., Steiner, R.A.

To be published.

Macromolecule Content

Total Structure Weight: 12.07 kDa
Atom Count: 833
Modeled Residue Count: 98
Deposited Residue Count: 102
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TITIN	A [auth T]	102	Homo sapiens	Mutation(s): 0 EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q8WZ42 (Homo sapiens) Explore Q8WZ42 Go to UniProtKB: Q8WZ42
PHAROS: Q8WZ42 GTEx: ENSG00000155657
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8WZ42
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
12P Query on 12P Download:Ideal Coordinates CCD File SDF format, chain C [auth T] SDF format, chain B [auth T] MOL2 format, chain C [auth T] MOL2 format, chain B [auth T] mmCIF format, chain C [auth T] mmCIF format, chain B [auth T]	B [auth T], C [auth T]	DODECAETHYLENE GLYCOL C₂₄ H₅₀ O₁₃ WRZXKWFJEFFURH-UHFFFAOYSA-N		Interactions Focus chain B [auth T] Focus chain C [auth T] Interactions & Density Focus chain B [auth T] Focus chain C [auth T]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.241 (Depositor), 0.246 (DCC)
R-Value Work: 0.194 (Depositor), 0.199 (DCC)
R-Value Observed: 0.196 (Depositor)

Space Group: P 4₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.45	α = 90
b = 43.45	β = 90
c = 56.38	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-03-02

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-03-02
Type: Initial release
Version 1.1: 2017-01-25
Changes: Atomic model, Data collection, Other, Version format compliance
Version 1.2: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.