2Y6D

The Discovery of MMP7 Inhibitors Exploiting a Novel Selectivity Trigger


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The Discovery of Mmp7 Inhibitors Exploiting a Novel Selectivity Trigger.

Edman, K.Furber, M.Hemsley, P.Johansson, C.Pairaudeau, G.Petersen, J.Stocks, M.Tervo, A.Ward, A.Wells, E.Wissler, L.

(2011) Chemmedchem 6: 769


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MATRILYSIN
A
174Homo sapiensMutation(s): 0 
Gene Names: MMP7 (MPSL1, PUMP1)
EC: 3.4.24.23
Find proteins for P09237 (Homo sapiens)
Go to Gene View: MMP7
Go to UniProtKB:  P09237
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
TQJ
Query on TQJ

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Download CCD File 
A
N-[(2S)-1-[4-(5-BROMOPYRIDIN-2-YL)PIPERAZIN-1-YL]SULFONYL-5-PYRIMIDIN-2-YL-PENTAN-2-YL]-N-HYDROXY-METHANAMIDE
C19 H25 Br N6 O4 S
KOKUKBSLFSEGAT-KRWDZBQOSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
TQJKi: 79 nM (100) BINDINGDB
TQJIC50: 79 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.196 
  • Space Group: I 4
Unit Cell:
Length (Å)Angle (°)
a = 76.590α = 90.00
b = 76.590β = 90.00
c = 60.924γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-05-04
    Type: Initial release
  • Version 1.1: 2011-05-08
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance