2Y1H

Crystal structure of the human TatD-domain protein 3 (TATDN3)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.177 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of the Human Tatd-Domain Protein 3 (Tatdn3)

Muniz, J.R.C.Puranik, S.Krojer, T.Yue, W.W.Ugochukwu, E.Filippakopoulos, P.von Delft, F.Arrowsmith, C.H.Edwards, A.M.Weigelt, J.Bountra, C.Kavanagh, K.L.Oppermann, U.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PUTATIVE DEOXYRIBONUCLEASE TATDN3
A, B
272Homo sapiensMutation(s): 0 
Gene Names: TATDN3
EC: 3.1.21.-
Find proteins for Q17R31 (Homo sapiens)
Go to Gene View: TATDN3
Go to UniProtKB:  Q17R31
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

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Download CCD File 
A, B
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
ZN
Query on ZN

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Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

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Download CCD File 
B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
NI
Query on NI

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Download CCD File 
A, B
NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.177 
  • Space Group: P 31
Unit Cell:
Length (Å)Angle (°)
a = 44.910α = 90.00
b = 44.910β = 90.00
c = 233.112γ = 120.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
PHASERphasing
BUSTERrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-12-29
    Type: Initial release
  • Version 1.1: 2012-12-05
    Type: Database references, Source and taxonomy, Structure summary, Version format compliance
  • Version 1.2: 2018-01-24
    Type: Database references