2XZZ | pdb_00002xzz

Crystal structure of the human transglutaminase 1 beta-barrel domain

PDB DOI: https://doi.org/10.2210/pdb2XZZ/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-11-30 Released: 2011-01-26
Deposition Author(s): Vollmar, M., Krysztofinska, E., Krojer, T., Yue, W.W., Cooper, C., Kavanagh, K., Allerston, C., Chaikuad, A., von Delft, F., Arrowsmith, C.H., Weigelt, J., Edwards, A., Bountra, C., Oppermann, U.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.267 (Depositor), 0.272 (DCC)
R-Value Work:
0.219 (Depositor)
R-Value Observed:
0.221 (Depositor)

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal Structure of the Human Transglutaminase 1 Beta-Barrel Domain

Vollmar, M., Krysztofinska, E., Krojer, T., Yue, W.W., Cooper, C., Kavanagh, K., Allerston, C., Chaikuad, A., von Delft, F., Arrowsmith, C.H., Weigelt, J., Edwards, A., Bountra, C., Oppermann, U.

To be published.

Macromolecule Content

Total Structure Weight: 10.99 kDa
Atom Count: 750
Modeled Residue Count: 97
Deposited Residue Count: 102
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE K	A	102	Homo sapiens	Mutation(s): 0 EC: 2.3.2.13
UniProt & NIH Common Fund Data Resources
Find proteins for P22735 (Homo sapiens) Explore P22735 Go to UniProtKB: P22735
PHAROS: P22735 GTEx: ENSG00000092295
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P22735
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.267 (Depositor), 0.272 (DCC)
R-Value Work: 0.219 (Depositor)
R-Value Observed: 0.221 (Depositor)

Space Group: I 4 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 115.74	α = 90
b = 115.74	β = 90
c = 115.74	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-01-26

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-01-26
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2018-01-24
Changes: Database references, Structure summary
Version 1.4: 2023-12-20
Changes: Data collection, Database references, Other, Refinement description