2XSD

Crystal Structure of the dimeric Oct-6 (Pou3f1) POU domain bound to palindromic MORE DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.198 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal Structure of the Dimeric Oct6 (POU3F1) POU Domain Bound to Palindromic More DNA.

Jauch, R.Choo, S.H.Ng, C.K.L.Kolatkar, P.R.

(2011) Proteins 79: 674


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
POU DOMAIN, CLASS 3, TRANSCRIPTION FACTOR 1C164Mus musculusMutation(s): 0 
Gene Names: Pou3f1Oct6Otf-6Otf6Scip
UniProt
Find proteins for P21952 (Mus musculus)
Explore P21952 
Go to UniProtKB:  P21952
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    5'-D(*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*AP)-3'A11N/A
    Protein Feature View
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    • Reference Sequence
    • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 2
      MoleculeChainsLengthOrganismImage
      5'-D(*CP*CP*TP*CP*AP*TP*GP*CP*AP*TP*AP)-3'B11N/A
      Protein Feature View
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      • Reference Sequence
      Small Molecules
      Ligands 1 Unique
      IDChainsName / Formula / InChI Key2D Diagram3D Interactions
      EDO
      Query on EDO

      Download Ideal Coordinates CCD File 
      D [auth C], E [auth C], F [auth C], G [auth C]1,2-ETHANEDIOL
      C2 H6 O2
      LYCAIKOWRPUZTN-UHFFFAOYSA-N
       Ligand Interaction
      Experimental Data & Validation

      Experimental Data

      • Method: X-RAY DIFFRACTION
      • Resolution: 2.05 Å
      • R-Value Free: 0.232 
      • R-Value Work: 0.194 
      • R-Value Observed: 0.198 
      • Space Group: C 1 2 1
      Unit Cell:
      Length ( Å )Angle ( ˚ )
      a = 93.497α = 90
      b = 52.009β = 129.03
      c = 69.013γ = 90
      Software Package:
      Software NamePurpose
      PHENIXrefinement
      PHASERphasing

      Structure Validation

      View Full Validation Report




      Entry History 

      Deposition Data

      Revision History  (Full details and data files)

      • Version 1.0: 2010-10-20
        Type: Initial release
      • Version 1.1: 2011-05-08
        Changes: Version format compliance
      • Version 1.2: 2011-07-13
        Changes: Version format compliance