2XSD

Crystal Structure of the dimeric Oct-6 (Pou3f1) POU domain bound to palindromic MORE DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.049 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of the Dimeric Oct6 (POU3F1) POU Domain Bound to Palindromic More DNA.

Jauch, R.Choo, S.H.Ng, C.K.L.Kolatkar, P.R.

(2011) Proteins 79: 674


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
POU DOMAIN, CLASS 3, TRANSCRIPTION FACTOR 1
C
164Mus musculusMutation(s): 0 
Gene Names: Pou3f1 (Oct6, Otf-6, Otf6, Scip)
Find proteins for P21952 (Mus musculus)
Go to UniProtKB:  P21952
Entity ID: 1
MoleculeChainsLengthOrganism
5'-D(*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*AP)-3'A11N/A
Entity ID: 2
MoleculeChainsLengthOrganism
5'-D(*CP*CP*TP*CP*AP*TP*GP*CP*AP*TP*AP)-3'B11N/A
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
C
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.049 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.194 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 93.497α = 90.00
b = 52.009β = 129.03
c = 69.013γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-10-20
    Type: Initial release
  • Version 1.1: 2011-05-08
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance