2X57 | pdb_00002x57

Crystal structure of the extracellular domain of human Vasoactive intestinal polypeptide receptor 2

PDB DOI: https://doi.org/10.2210/pdb2X57/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-02-05 Released: 2010-03-09
Deposition Author(s): Pike, A.C.W., Barr, A.J., Quigley, A., Burgess Brown, N., de Riso, A., Bullock, A., Berridge, G., Muniz, J.R.C., Chaikaud, A., Vollmar, M., Krojer, T., Ugochukwu, E., von Delft, F., Edwards, A., Arrowsmith, C.H., Weigelt, J., Bountra, C., Carpenter, E.P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.235 (Depositor)
R-Value Work:
0.207 (Depositor)
R-Value Observed:
0.208 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of the Extracellular Domain of Human Vasoactive Intestinal Polypeptide Receptor 2

Pike, A.C.W., Barr, A.J., Quigley, A., Burgess Brown, N., De Riso, A., Bullock, A., Berridge, G., Muniz, J.R.C., Chaikaud, A., Vollmar, M., Krojer, T., Ugochukwu, E., von Delft, F., Edwards, A., Arrowsmith, C.H., Weigelt, J., Bountra, C., Carpenter, E.P.

To be published.

Macromolecule Content

Total Structure Weight: 39.79 kDa
Atom Count: 2,579
Modeled Residue Count: 311
Deposited Residue Count: 348
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
VASOACTIVE INTESTINAL POLYPEPTIDE RECEPTOR 2	A, B, C	116	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P41587 (Homo sapiens) Explore P41587 Go to UniProtKB: P41587
PHAROS: P41587 GTEx: ENSG00000106018
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P41587
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.235 (Depositor)
R-Value Work: 0.207 (Depositor)
R-Value Observed: 0.208 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 99.7	α = 90
b = 99.7	β = 90
c = 104.34	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
SHELXDE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-03-09

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-03-09
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2018-01-24
Changes: Database references
Version 1.3: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Other, Structure summary