2WZ9 | pdb_00002wz9

Crystal structure of the thioredoxin domain of human TXNL2

• PDB DOI: https://doi.org/10.2210/pdb2WZ9/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2009-11-25 Released: 2010-03-16 
• Deposition Author(s): Vollmar, M., Johannson, C., Cocking, R., Pike, A.C.W., Muniz, J.R.C., Edwards, A., von Delft, F., Bountra, C., Arrowsmith, C.H., Weigelt, J., Kavanagh, K.L.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.55 Å
• R-Value Free: 
  0.179 (Depositor), 0.189 (DCC) 
• R-Value Work: 
  0.154 (Depositor), 0.163 (DCC) 
• R-Value Observed: 
  0.156 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of the Thioredoxin Domain of Human Txnl2

Vollmar, M., Johannson, C., Cocking, R., Pike, A.C.W., Muniz, J.R.C., Edwards, A., von Delft, F., Bountra, C., Kavanagh, K.L.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 16.63 kDa 
• Atom Count: 1,114 
• Modeled Residue Count: 120 
• Deposited Residue Count: 153 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GLUTAREDOXIN-3	A	153	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for O76003 (Homo sapiens) Explore O76003  Go to UniProtKB:  O76003
PHAROS:  O76003 GTEx:  ENSG00000108010

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.55 Å
• R-Value Free:  0.179 (Depositor), 0.189 (DCC) 
• R-Value Work:  0.154 (Depositor), 0.163 (DCC) 
• R-Value Observed: 0.156 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.63	α = 90
b = 52.06	β = 90
c = 58.6	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-03-16 
Deposition Author(s): Vollmar, M., Johannson, C., Cocking, R., Pike, A.C.W., Muniz, J.R.C., Edwards, A., von Delft, F., Bountra, C., Arrowsmith, C.H., Weigelt, J., Kavanagh, K.L.

Revision History  

• Version 1.0: 2010-03-16
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2018-01-24
  Changes: Database references, Structure summary
• Version 1.4: 2023-12-20
  Changes: Data collection, Database references, Other, Refinement description