2WU1

Glucosamine-6-Phosphate Deaminase Complexed with the Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate both in the Active and Allosteric sites.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.149 
  • R-Value Observed: 0.151 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

Glucosamine-6-Phosphate Deaminase Mechanism: The Substrate Piranosic Ring Opening

Rudino-Pinera, E.Rojas-Trejo, S.P.Calcagno, M.L.Horjales, E.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
GLUCOSAMINE-6-PHOSPHATE DEAMINASEA, B266Escherichia coli K-12Mutation(s): 0 
Gene Names: nagBglmDb0678JW0664
EC: 3.5.99.6
UniProt
Find proteins for P0A759 (Escherichia coli (strain K12))
Explore P0A759 
Go to UniProtKB:  P0A759
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FGS
Query on FGS

Download Ideal Coordinates CCD File 
D [auth A], F [auth B]5-(ACETYLAMINO)-5-DEOXY-1-O-PHOSPHONO-L-IDITOL
C8 H18 N O9 P
WHHOIWRDVIBHSP-RULNZFCNSA-N
 Ligand Interaction
16G
Query on 16G

Download Ideal Coordinates CCD File 
C [auth A], E [auth B]2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose
C8 H16 N O9 P
BRGMHAYQAZFZDJ-PVFLNQBWSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.149 
  • R-Value Observed: 0.151 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 125.72α = 90
b = 125.72β = 90
c = 223.952γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling
CNSphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-10-06
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2019-01-30
    Changes: Data collection, Experimental preparation, Other
  • Version 1.4: 2019-05-22
    Changes: Data collection, Experimental preparation
  • Version 1.5: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Other, Structure summary