2WOA

MMP12 complex with a beta hydroxy carboxylic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.153 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The Identification of Beta-Hydroxy Carboxylic Acids as Selective Mmp-12 Inhibitors.

Holmes, I.P.Gaines, S.Watson, S.P.Lorthioir, O.Walker, A.Baddeley, S.J.Herbert, S.Egan, D.Convery, M.A.Singh, O.M.P.Gross, J.W.Strelow, J.M.Smith, R.H.Amour, A.J.Brown, D.Martin, S.L.

(2009) Bioorg.Med.Chem.Lett. 19: 5760

  • DOI: 10.1016/j.bmcl.2009.07.155
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • A new class of selective MMP-12 inhibitors have been identified via high throughput screening. Crystallization with MMP-12 confirmed the mode of binding and allowed initial optimization to be carried out using classical structure based design.

    A new class of selective MMP-12 inhibitors have been identified via high throughput screening. Crystallization with MMP-12 confirmed the mode of binding and allowed initial optimization to be carried out using classical structure based design.


    Organizational Affiliation

    GSK Medicines Research Centre, Gunnels Wood Road, Stevenage, Hertfordshire SG1 2NY, United Kingdom.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MACROPHAGE METALLOELASTASE
A, B, C, D
164Homo sapiensMutation(s): 0 
Gene Names: MMP12 (HME)
EC: 3.4.24.65
Find proteins for P39900 (Homo sapiens)
Go to Gene View: MMP12
Go to UniProtKB:  P39900
Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

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A, B, C, D
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

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A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
D
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

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A, B, C, D
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
576
Query on 576

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Download CCD File 
A, C
(3S)-5-(9H-FLUOREN-2-YL)-3-HYDROXYPENTANOIC ACID
C18 H18 O3
QNNGXIOOEUXOPM-HNNXBMFYSA-N
 Ligand Interaction
023
Query on 023

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Download CCD File 
B, D
N^2^-[(2R)-2-{(1S)-1-[FORMYL(HYDROXY)AMINO]ETHYL}-5-PHENYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE
C21 H33 N3 O4
GHVMTHKJUAOZJP-CGTJXYLNSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
576IC50: 1150 nM BINDINGMOAD
576IC50: 1150 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.153 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 46.156α = 66.11
b = 65.339β = 84.12
c = 68.332γ = 71.46
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-09-08
    Type: Initial release
  • Version 1.1: 2011-05-08
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance