2WNS

Human Orotate phosphoribosyltransferase (OPRTase) domain of Uridine 5' -monophosphate synthase (UMPS) in complex with its substrate orotidine 5'-monophosphate (OMP)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.182 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Human Orotate Phosphoribosyltransferase (Oprtase) Domain of Uridine 5'-Monophosphate Synthase (Umps) in Complex with its Substrate Orotidine 5'-Monophosphate (Omp)

Moche, M.Roos, A.Arrowsmith, C.H.Berglund, H.Bountra, C.Collins, R.Edwards, A.M.Flodin, S.Flores, A.Graslund, S.Hammarstrom, M.Johansson, A.Johansson, I.Karlberg, T.Kotyenova, T.Kotzch, A.Nielsen, T.K.Nyman, T.Persson, C.Sagemark, J.Schueler, H.Schutz, P.Siponen, M.I.Svensson, L.Thorsell, A.G.Tresaugues, L.Vandenberg, S.Weigelt, J.Welin, M.Wisniewska, M.Nordlund, P.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
OROTATE PHOSPHORIBOSYLTRANSFERASEAB205Homo sapiensMutation(s): 0 
Gene Names: UMPSOK/SW-cl.21
EC: 2.4.2.10 (PDB Primary Data), 4.1.1.23 (UniProt)
Find proteins for P11172 (Homo sapiens)
Explore P11172 
Go to UniProtKB:  P11172
NIH Common Fund Data Resources
PHAROS  P11172
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OMP
Query on OMP

Download CCD File 
A, B
OROTIDINE-5'-MONOPHOSPHATE
C10 H13 N2 O11 P
KYOBSHFOBAOFBF-XVFCMESISA-N
 Ligand Interaction
CL
Query on CL

Download CCD File 
B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.182 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.4α = 90
b = 43.6β = 113.4
c = 71γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Revision History 

  • Version 1.0: 2009-08-11
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance