2WIZ

Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate

• PDB DOI: https://doi.org/10.2210/pdb2WIZ/pdb
• NAKB: 2WIZ

• Classification: HYDROLASE/DNA
• Organism(s): Archaeoglobus fulgidus DSM 4304, synthetic construct
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2009-05-18 Released: 2009-05-26 
• Deposition Author(s): Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Free: 0.283 
• R-Value Work: 0.204 
• R-Value Observed: 0.208 

Literature

Crystal Structures of Holliday Junction Resolvases from Archaeoglobus Fulgidus Bound to DNA Substrate

Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 43.62 kDa 
• Atom Count: 2,791 
• Modelled Residue Count: 287 
• Deposited Residue Count: 318 
• Unique protein chains: 1
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ARCHAEAL HJC	A, B	139	Archaeoglobus fulgidus DSM 4304	Mutation(s): 0
UniProt
Find proteins for O28314 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28314  Go to UniProtKB:  O28314

Entity ID: 2
Molecule	Chains	Length	Organism	Image
HALF-JUNCTION	C	20	synthetic construct

Entity ID: 3
Molecule	Chains	Length	Organism	Image
HALF-JUNCTION	D	20	synthetic construct

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Free: 0.283 
• R-Value Work: 0.204 
• R-Value Observed: 0.208 
• Space Group: P 6₂ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 122.65	α = 90
b = 122.65	β = 90
c = 125.51	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-05-26 
Deposition Author(s): Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.

Revision History  

• Version 1.0: 2009-05-26
  Type: Initial release
  
• Version 1.1: 2015-09-30
  Changes: Derived calculations, Refinement description, Source and taxonomy, Version format compliance
• Version 1.2: 2023-12-13
  Changes: Data collection, Database references, Other, Refinement description