2WEI

Crystal structure of the kinase domain of Cryptosporidium parvum calcium dependent protein kinase in complex with 3-MB-PP1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

The Cryptosporidium Parvum Kinome.

Artz, J.D.Wernimont, A.K.Allali-Hassani, A.Zhao, Y.Amani, M.Lin, Y.H.Senisterra, G.Wasney, G.A.Fedorov, O.King, O.Roos, A.K.Lunin, V.V.Qiu, W.Finerty, P.J.Hutchinson, A.Chau, I.von Delft, F.MacKenzie, F.I.Lew, J.Kozieradzki, I.Vedadi, M.Schapira, M.Zhang, C.Shokat, K.M.Heightman, T.Hui, R.

(2011) Bmc Genomics 12: 478

  • DOI: 10.1186/1471-2164-12-478

  • PubMed Abstract: 
  • Hundreds of millions of people are infected with cryptosporidiosis annually, with immunocompromised individuals suffering debilitating symptoms and children in socioeconomically challenged regions at risk of repeated infections. There is currently no ...

    Hundreds of millions of people are infected with cryptosporidiosis annually, with immunocompromised individuals suffering debilitating symptoms and children in socioeconomically challenged regions at risk of repeated infections. There is currently no effective drug available. In order to facilitate the pursuit of anti-cryptosporidiosis targets and compounds, our study spans the classification of the Cryptosporidium parvum kinome and the structural and biochemical characterization of representatives from the CDPK family and a MAP kinase.


    Organizational Affiliation

    Structural Genomics Consortium, University of Toronto, MaRS South Tower, Floor 7, 101 College St, Toronto, Ontario M5G 1L7, Canada. jdartz@gmail.com




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CALMODULIN-DOMAIN PROTEIN KINASE 1, PUTATIVE
A
287Cryptosporidium parvum (strain Iowa II)Mutation(s): 0 
Find proteins for A3FQ16 (Cryptosporidium parvum (strain Iowa II))
Go to UniProtKB:  A3FQ16
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
VGG
Query on VGG

Download SDF File 
Download CCD File 
A
1-tert-butyl-3-(3-methylbenzyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine
C17 H21 N5
FYCOTGCSHZKHPR-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
VGGIC50: 3.4 nM BINDINGMOAD
VGGIC50: 3.4 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.196 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 68.900α = 90.00
b = 68.900β = 90.00
c = 130.460γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
PHASERphasing
SCALAdata scaling
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2009-04-28
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.2: 2011-10-12
    Type: Database references, Derived calculations, Refinement description
  • Version 1.3: 2012-12-05
    Type: Database references, Structure summary
  • Version 1.4: 2018-01-24
    Type: Database references, Structure summary