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Download EndnoteCrystal Structure of the Apo and Holo Forms of Rhodotorula Graminis D(-)-Mandelate Dehydrogenase
Vachieri, S.G., Cole, A.R., Bagneris, C., Baker, D.P., Fewson, C.A., Basak, A.K.To be published.
2W2L
Crystal structure of the holo forms of Rhodotorula graminis D- mandelate dehydrogenase at 2.5A.
- DOI: 10.2210/pdb2W2L/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Rhodotorula graminis
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2008-11-02 Released: 2009-11-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.5 Å
- R-Value Free: 0.265
- R-Value Work: 0.182
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| D-MANDELATE DEHYDROGENASE | A, B, C | 348 | Rhodotorula graminis | Mutation(s): 0 Gene Names: dmdh |
Find proteins for Q7LLW9 (Rhodotorula graminis) Go to UniProtKB: Q7LLW9 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| D-MANDELATE DEHYDROGENASE | D | 348 | Rhodotorula graminis | Mutation(s): 0 Gene Names: dmdh |
Find proteins for Q7LLW9 (Rhodotorula graminis) Go to UniProtKB: Q7LLW9 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | A, B, C, D | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| NAD Query on NAD | A, B, C, D | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.5 Å
- R-Value Free: 0.265
- R-Value Work: 0.182
- Space Group: P 1 21 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 100.098 | α = 90.00 |
| b = 110.154 | β = 90.00 |
| c = 79.836 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| REFMAC | refinement |
| PHASER | phasing |
| MOSFLM | data reduction |
Entry History
Deposition Data
- Deposited Date: 2008-11-02
- Released Date: 2009-11-17
- Deposition Author(s): Vachieri, S.G., Cole, A.R., Bagneris, C., Baker, D.P., Fewson, C.A., Basak, A.K.
Revision History
- Version 1.0: 2009-11-17
Type: Initial release - Version 1.1: 2011-05-08
Type: Version format compliance - Version 1.2: 2011-07-13
Type: Version format compliance - Version 1.3: 2018-01-24
Type: Advisory, Source and taxonomy
