2VN4
Glycoside Hydrolase Family 15 Glucoamylase from Hypocrea jecorina
- PDB DOI: https://doi.org/10.2210/pdb2VN4/pdb
- Classification: HYDROLASE
- Organism(s): Trichoderma reesei
- Mutation(s): No 
- Deposited: 2008-01-30 Released: 2008-05-20 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.182 
- R-Value Work: 0.154 
- R-Value Observed: 0.156 
wwPDB Validation   3D Report Full Report
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This is version 2.1 of the entry. See complete history. 
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
GLUCOAMYLASE | 599 | Trichoderma reesei | Mutation(s): 0  EC: 3.2.1.3 | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | K [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
BTB Query on BTB | L [auth A], M [auth A] | 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C8 H19 N O5 OWMVSZAMULFTJU-UHFFFAOYSA-N | |||
MAN Query on MAN | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | alpha-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.182 
- R-Value Work: 0.154 
- R-Value Observed: 0.156 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 52.185 | α = 90 |
b = 99.232 | β = 90 |
c = 121.24 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
MOSFLM | data reduction |
SCALA | data scaling |
MOLREP | phasing |
Structure Validation
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Entry History 
Deposition Data
- Released Date: 2008-05-20  Deposition Author(s): Bott, R., Sandgren, M., Hansson, H.
Revision History (Full details and data files)
- Version 1.0: 2008-05-20
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2018-01-17
Changes: Data collection - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-12-13
Changes: Data collection, Database references, Refinement description, Structure summary