2VKP

Crystal structure of BTB domain from BTBD6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
BTB/POZ DOMAIN-CONTAINING PROTEIN 6
A, B
109Homo sapiensGene Names: BTBD6 (BDPL)
Find proteins for Q96KE9 (Homo sapiens)
Go to Gene View: BTBD6
Go to UniProtKB:  Q96KE9
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
B
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.194 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 58.135α = 90.00
b = 58.135β = 90.00
c = 332.456γ = 120.00
Software Package:
Software NamePurpose
SCALAdata scaling
REFMACrefinement
SHELXDEphasing
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-02-12
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.2: 2013-03-06
    Type: Data collection, Database references, Derived calculations, Other
  • Version 1.3: 2017-12-13
    Type: Database references, Source and taxonomy