2VIS

INFLUENZA VIRUS HEMAGGLUTININ, (ESCAPE) MUTANT WITH THR 131 REPLACED BY ILE, COMPLEXED WITH A NEUTRALIZING ANTIBODY


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Antigen distortion allows influenza virus to escape neutralization.

Fleury, D.Wharton, S.A.Skehel, J.J.Knossow, M.Bizebard, T.

(1998) Nat.Struct.Mol.Biol. 5: 119-123

  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The structure of the hemagglutinin (HA) of a mutant influenza virus that escapes neutralization by a monoclonal antibody shows that the mutation causes changes in HA structure which avoid an energetically less favorable conformation. However, the str ...

    The structure of the hemagglutinin (HA) of a mutant influenza virus that escapes neutralization by a monoclonal antibody shows that the mutation causes changes in HA structure which avoid an energetically less favorable conformation. However, the structure of the mutant HA.Fab complex indicates that the antibody binds selectively to mutant HA in a wild type-like distorted conformation. The association of an antibody with a less favored HA conformation represents an alternative to previously described mechanisms of escape from neutralization by antibodies.


    Related Citations: 
    • Refined Three-Dimensional Structure of the Fab Fragment of a Murine Iggl, Antibody
      Bizebard, T.,Daniels, R.,Kahn, R.,Golinelli-Pimpaneau, B.,Skehel, J.J.,Knossow, M.
      (1994) Acta Crystallogr.,Sect.D 50: 768
    • Structure of the Haemagglutinin Membrane Glycoprotein of Influenza Virus at 3 A Resolution
      Wilson, I.A.,Skehel, J.J.,Wiley, D.C.
      (1981) Nature 289: 366
    • Structure of Influenza Virus Haemagglutinin Complexed with a Neutralizing Antibody
      Bizebard, T.,Gigant, B.,Rigolet, P.,Rasmussen, B.,Diat, O.,Bosecke, P.,Wharton, S.A.,Skehel, J.J.,Knossow, M.
      (1995) Nature 376: 92


    Organizational Affiliation

    Laboratoire d'Enzymologie et Biochimie Structurales, CNRS, Gif-sur-Yvette, France.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
IMMUNOGLOBULIN (IGG1, LAMBDA)
A
210N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
IMMUNOGLOBULIN (IGG1, LAMBDA)
B
221Mus musculusMutation(s): 0 
Gene Names: Igh
Find proteins for Q99LC4 (Mus musculus)
Go to UniProtKB:  Q99LC4
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
HEMAGGLUTININ
C
282Influenza A virus (strain A/Aichi/2/1968 H3N2)Mutation(s): 1 
Gene Names: HA
Find proteins for P03437 (Influenza A virus (strain A/Aichi/2/1968 H3N2))
Go to UniProtKB:  P03437
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, C
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
C
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
FABKd: 4000 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.188 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 85.500α = 90.00
b = 85.500β = 90.00
c = 515.000γ = 120.00
Software Package:
Software NamePurpose
HKLdata collection
X-PLORmodel building
HKLdata reduction
X-PLORrefinement
X-PLORphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1998-04-29
    Type: Initial release
  • Version 1.1: 2008-03-25
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Non-polymer description, Version format compliance